An atlas of healthy and injured cell states and niches in the human kidney
Cite
Lake, B.B., Menon, R., Winfree, S., Hu, Q., Melo Ferreira, R., Kalhor, K., Barwinska, D., Otto, E.A., Ferkowicz, M., Diep, D. and Plongthongkum, N., 2023. An atlas of healthy and injured cell states and niches in the human kidney. Nature, 619(7970), pp.585-594.
https://doi.org/10.1038/s41586-023-05769-3
Abstract
Understanding kidney disease relies on defining the complexity of cell types and states, their associated molecular profiles and interactions within tissue neighbourhoods1. Here we applied multiple single-cell and single-nucleus assays (>400,000 nuclei or cells) and spatial imaging technologies to a broad spectrum of healthy reference kidneys (45 donors) and diseased kidneys (48 patients). This has provided a high-resolution cellular atlas of 51 main cell types, which include rare and previously undescribed cell populations. The multi-omic approach provides detailed transcriptomic profiles, regulatory factors and spatial localizations spanning the entire kidney. We also define 28 cellular states across nephron segments and interstitium that were altered in kidney injury, encompassing cycling, adaptive (successful or maladaptive repair), transitioning and degenerative states. Molecular signatures permitted the localization of these states within injury neighbourhoods using spatial transcriptomics, while large-scale 3D imaging analysis (around 1.2 million neighbourhoods) provided corresponding linkages to active immune responses. These analyses defined biological pathways that are relevant to injury time-course and niches, including signatures underlying epithelial repair that predicted maladaptive states associated with a decline in kidney function. This integrated multimodal spatial cell atlas of healthy and diseased human kidneys represents a comprehensive benchmark of cellular states, neighbourhoods, outcome-associated signatures and publicly available interactive visualizations.
Datasets
1. Integrated Single-nucleus and Single-cell RNA-seq of the Adult Human Kidney
ExploreSample ID
Experiment
Specimen ID
Disease
Disease (level 1)
Disease (level 2)
Subject ID
Tissue region (level 1)
Tissue region (level 2)
Percent of cortex
Percent of medulla
Sample tissue type
Sample source
Cell type
Cell type (subclass l3)
Cell type (subclass l2)
Cell type (subclass l1)
State l2
State
Cell type (class)
Structure
eGFR
BMI
Diabetes history
Hypertension
Assay
Sex
Tissue
Ethnicity
Age
Age group
Leiden clustering
KB813,763 cells
KB58,667 cells
KBCVD38,609 cells
KB48,216 cells
KC797,775 cells
KC787,481 cells
KB77,019 cells
KB166,917 cells
PA36,488 cells
763-EO-16,110 cells
KB136,099 cells
PA46,089 cells
KB16,039 cells
KM1035,815 cells
KC335,744 cells
KM1025,652 cells
KC345,520 cells
573-EO-25,463 cells
KB35,380 cells
KB105,113 cells
269-EO-14,953 cells
KBCVD14,885 cells
KC394,837 cells
KB114,799 cells
KC774,765 cells
KC824,718 cells
2318-EO-24,690 cells
KB124,666 cells
1119-EO-24,333 cells
613-EO-24,173 cells
2318-EO-34,121 cells
1117-EO-24,053 cells
1120-EO-23,936 cells
763-EO-33,858 cells
KM693,730 cells
KB63,695 cells
1121-EO-23,634 cells
KC843,473 cells
345-EO-33,239 cells
dKC33,199 cells
KBCVD23,190 cells
dKC23,056 cells
1120-EO-12,996 cells
KC352,962 cells
573-EO-12,944 cells
KBCVD42,891 cells
2318-EO-12,834 cells
1121-EO-32,667 cells
763-EO-22,666 cells
622-EO-22,617 cells
KM722,468 cells
KC362,444 cells
269-EO-22,396 cells
KC402,256 cells
622-EO-12,225 cells
763-EO-42,153 cells
KB142,098 cells
KC832,013 cells
1117-EO-11,724 cells
PA51,678 cells
dKC11,661 cells
PRE0271,631 cells
PRE0381,540 cells
613-EO-11,426 cells
PRE98sc1,336 cells
1153EO-31,334 cells
1162EO-21,329 cells
PRE019-41,323 cells
KB151,301 cells
KM711,291 cells
KB91,256 cells
1157EO-21,166 cells
1121-EO-11,145 cells
1119-EO-11,104 cells
1157EO-11,042 cells
PRE19-025994 cells
141361988 cells
PRE018-1963 cells
1162EO-1962 cells
593-EO-1960 cells
1158EO-3958 cells
1158EO-2933 cells
1153EO-2844 cells
1153EO-1833 cells
1157EO-3740 cells
PRE19-05635 cells
PRE062-1635 cells
1158EO-1519 cells
PRE055-1517 cells
1120-EO-3460 cells
KB2352 cells
PA1268 cells
593-EO-2212 cells
KPMP_20200115B_10X-R13,763 cells
KPMP_20191219C_10X-R8,667 cells
KPMP_20200702A_10X-R8,609 cells
KPMP_20191219B_10X-R8,216 cells
KPMP_20190607K-10X-R7,775 cells
KPMP_20190607J-10X-R7,481 cells
KPMP_20200115A_10X-R7,019 cells
KPMP_20200212H_10X-R6,917 cells
BUKMAP_20200304F_10X-R6,488 cells
PREMIERE86,110 cells
KPMP_20200212E_10X-R6,099 cells
BUKMAP_20200702D_10X-R6,089 cells
KPMP_20191204A_10X-R6,039 cells
BUKMAP_20200304B_10X-R5,815 cells
BUKMAP_20190529L_10X-R5,744 cells
BUKMAP_20200304A_10X-R5,652 cells
BUKMAP_20190607L_10X-R5,520 cells
PREMIERE205,463 cells
KPMP_20191219A_10X-R5,380 cells
KPMP_20200212B_10X-R5,113 cells
PREMIERE284,953 cells
KPMP_20200513A_10X-R4,885 cells
BUKMAP_20191010-10X-R4,837 cells
KPMP_20200212C_10X-R4,799 cells
KPMP_20190607I-10X-R4,765 cells
BUKMAP_20200702C_10X-R4,718 cells
PREMIERE74,690 cells
KPMP_20200212D_10X-R4,666 cells
PREMIERE104,333 cells
PREMIERE254,173 cells
PREMIERE184,121 cells
PREMIERE134,053 cells
PREMIERE223,936 cells
PREMIERE173,858 cells
BUKMAP_20200205A_10X-R3,730 cells
KPMP_20191219D_10X-R3,695 cells
PREMIERE13,634 cells
BUKMAP_20200707B_10X-R3,473 cells
PREMIERE43,239 cells
KPMP_20190829E_10X-R3,199 cells
KPMP_20200513B_10X-R3,190 cells
KPMP_20190829D_10X-R3,056 cells
PREMIERE122,996 cells
BUKMAP_20190822F_10X-R2,962 cells
PREMIERE152,944 cells
KPMP_20200702B_10X-R2,891 cells
PREMIERE212,834 cells
PREMIERE192,667 cells
PREMIERE52,666 cells
PREMIERE112,617 cells
BUKMAP_20200205F_10X-R2,468 cells
BUKMAP_20190829B_10X-R2,444 cells
PREMIERE292,396 cells
BUKMAP_20191104A-10X-R2,256 cells
PREMIERE162,225 cells
PREMIERE242,153 cells
KPMP_20200212F_10X-R2,098 cells
BUKMAP_20200707A_10X-R2,013 cells
PREMIERE271,724 cells
BUKMAP_20200707C_10X-R1,678 cells
KPMP_20190829C_10X-R1,661 cells
PREMIERE321,631 cells
PREMIERE331,540 cells
PREMIERE61,426 cells
PREMIERE381,336 cells
PREMIERE411,334 cells
PREMIERE491,329 cells
PREMIERE311,323 cells
KPMP_20200212G_10X-R1,301 cells
BUKMAP_20200205D_10X-R1,291 cells
KPMP_20200212A_10X-R1,256 cells
PREMIERE431,166 cells
PREMIERE21,145 cells
PREMIERE261,104 cells
PREMIERE421,042 cells
PREMIERE36994 cells
PREMIERE3988 cells
PREMIERE30963 cells
PREMIERE48962 cells
PREMIERE23960 cells
PREMIERE47958 cells
PREMIERE46933 cells
PREMIERE40844 cells
PREMIERE39833 cells
PREMIERE44740 cells
PREMIERE37635 cells
PREMIERE35635 cells
PREMIERE45519 cells
PREMIERE34517 cells
PREMIERE9460 cells
KPMP_20191204B_10X-R352 cells
BUKMAP_20191009-10X-R268 cells
PREMIERE14212 cells
K1900174_216,670 cells
S-1910-000149_R113,763 cells
S-1905-0175559,027 cells
S-1908-010077_R18,667 cells
COV-02-0094-N18,609 cells
S-1908-000858_R18,216 cells
18-312-2-M27,775 cells
18-142-3-M27,481 cells
S-1909-007161_R17,019 cells
S-1910-000196_R16,917 cells
K2000094_2_R16,488 cells
S-1908-0098366,110 cells
S-1908-009890_R16,099 cells
KRP460P-16,089 cells
S-1908-000952-R16,039 cells
K1900387_4_R15,815 cells
K1900387_1_R15,652 cells
S-1909-0071545,463 cells
S-1908-009653_R15,380 cells
S-1908-000905_R15,113 cells
S-1908-0008984,953 cells
09751-1N4,885 cells
446_B34,837 cells
S-1908-009843_R14,799 cells
18-162-2-M24,765 cells
KRP460C-14,718 cells
S-1908-0100244,690 cells
S-1908-010125_R14,666 cells
S-1904-0081344,333 cells
S-2001-0054094,173 cells
S-2001-0000954,121 cells
S-1908-0007574,053 cells
S-2001-0001423,936 cells
K1900175_1_R13,730 cells
S-1910-000055_R13,695 cells
S-1908-0097403,634 cells
KRP462C-13,473 cells
S-2002-0077483,239 cells
K1800353_33,199 cells
10550-1N3,190 cells
K1800305_43,056 cells
S-1903-0054712,996 cells
COV-02-0096-N12,891 cells
S-2001-0000482,834 cells
S-1910-0000952,667 cells
S-1908-0100712,666 cells
S-1904-0072982,617 cells
K1900019_1_R32,468 cells
S-1910-0001422,396 cells
K1800364_12,256 cells
S-1910-0001892,153 cells
S-2001-000055_R12,098 cells
KRP461C-12,013 cells
S-1910-0000481,724 cells
KRP462P-11,678 cells
K1800280_61,661 cells
PRE0271,631 cells
PRE0381,540 cells
S-1908-0101181,426 cells
PRE98sc1,336 cells
Sample1153-EO31,334 cells
Sample1162-EO21,329 cells
PRE019-41,323 cells
S-2001-000102_R11,301 cells
K1800430_3_R31,291 cells
S-1908-010172_R11,256 cells
Sample1157-EO21,166 cells
S-1908-0096461,145 cells
S-2001-0194181,104 cells
Sample1157-EO11,042 cells
PRE19-025994 cells
S-1908-009787988 cells
PRE018-1963 cells
Sample1162-EO1962 cells
S-1908-000945960 cells
Sample1158-EO3958 cells
Sample1158-EO2933 cells
Sample1153-EO2844 cells
Sample1153-EO1833 cells
Sample1157-EO3740 cells
PRE062-1635 cells
PRE19-05635 cells
Sample1158-EO1519 cells
PRE055-1517 cells
S-1908-009883460 cells
S-1905-017562-R1352 cells
446_B1268 cells
S-1905-018690212 cells
Normal Reference107,701 cells
Acute Kidney Injury (AKI)65,171 cells
Diabetic Kidney Disease (DKD)64,429 cells
Hypertensive CKD (H-CKD)39,860 cells
COVID-AKI19,575 cells
Chronic Kidney Disease7,916 cells
CKD112,205 cells
Ref107,701 cells
AKI84,746 cells
Ref107,701 cells
DKD67,628 cells
AKI65,171 cells
H-CKD44,577 cells
COV-AKI19,575 cells
353520,400 cells
31-1001316,159 cells
29-1001212,482 cells
359311,467 cells
32-1000311,333 cells
33-1000510,909 cells
KRP46010,807 cells
31-1000010,066 cells
29-100069,379 cells
31-100359,070 cells
COV-02-00948,609 cells
31-100068,216 cells
18-3127,775 cells
18-1427,481 cells
31-100016,999 cells
33-100066,559 cells
30-100346,525 cells
36136,488 cells
32-100346,092 cells
29-100105,422 cells
29-100085,419 cells
KRP4625,151 cells
KRP4465,105 cells
29-100134,932 cells
COV-02-00104,885 cells
18-1624,765 cells
32-100744,690 cells
34-100504,333 cells
31-100404,173 cells
27-100394,053 cells
29-100163,936 cells
30-100183,634 cells
30-101253,239 cells
34873,199 cells
COV-02-00023,190 cells
34793,056 cells
34-101872,996 cells
PRE0192,952 cells
COV-02-00962,891 cells
29-100112,667 cells
34-101842,617 cells
35042,468 cells
34902,256 cells
KRP4612,013 cells
34771,661 cells
PRE0271,631 cells
PRE0381,540 cells
PRE98sc1,336 cells
Sample1153-EO31,334 cells
Sample1162-EO21,329 cells
34991,291 cells
32-21,256 cells
Sample1157-EO21,166 cells
31-100421,104 cells
Sample1157-EO11,042 cells
30-10123988 cells
PRE018-1963 cells
Sample1162-EO1962 cells
Sample1158-EO3958 cells
Sample1158-EO2933 cells
Sample1153-EO2844 cells
Sample1153-EO1833 cells
Sample1157-EO3740 cells
PRE062-1635 cells
Sample1158-EO1519 cells
PRE055-1517 cells
28-10051212 cells
Cortex122,914 cells
Unassigned104,314 cells
Medulla57,086 cells
Papilla20,338 cells
C109,540 cells
NA104,314 cells
M37,376 cells
C-M33,084 cells
P20,338 cells
Unassigned104,314 cells
100.095,142 cells
0.037,936 cells
10.017,310 cells
60.013,374 cells
40.08,137 cells
95.07,481 cells
85.06,917 cells
30.06,460 cells
45.05,113 cells
5.02,468 cells
Unassigned104,314 cells
0.095,142 cells
100.037,936 cells
90.017,310 cells
40.013,374 cells
60.08,137 cells
5.07,481 cells
15.06,917 cells
70.06,460 cells
55.05,113 cells
95.02,468 cells
Biopsy234,601 cells
Nephrectomy50,805 cells
Deceased Donor19,246 cells
reference200,338 cells
query104,314 cells
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell26,027 cells
Degenerative Proximal Tubule Epithelial Cell25,023 cells
Cortical Thick Ascending Limb Cell23,767 cells
Proximal Tubule Epithelial Cell Segment 1 / Segment 217,623 cells
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell14,924 cells
Degenerative Medullary Thick Ascending Limb Cell11,109 cells
Degenerative Outer Medullary Collecting Duct Principal Cell9,801 cells
Peritubular Capilary Endothelial Cell9,195 cells
Medullary Thick Ascending Limb Cell8,876 cells
Distal Convoluted Tubule Cell Type 17,763 cells
Cortical Collecting Duct Intercalated Cell Type A7,673 cells
T Cell7,118 cells
Connecting Tubule Cell7,024 cells
Proximal Tubule Epithelial Cell Segment 36,549 cells
Medullary Fibroblast6,138 cells
Fibroblast5,591 cells
Ascending Vasa Recta Endothelial Cell5,132 cells
Descending Thin Limb Cell Type 14,700 cells
Degenerative Distal Convoluted Tubule Cell4,551 cells
Monocyte-derived Cell4,441 cells
Cortical Collecting Duct Principal Cell4,361 cells
Inner Medullary Collecting Duct Cell4,287 cells
Descending Vasa Recta Endothelial Cell4,286 cells
Natural Killer Cell / Natural Killer T Cell4,201 cells
Macula Densa Cell4,115 cells
Connecting Tubule Principal Cell3,975 cells
Glomerular Capillary Endothelial Cell3,764 cells
M2 Macrophage3,533 cells
Degenerative Cortical Thick Ascending Limb Cell3,466 cells
Vascular Smooth Muscle Cell / Pericyte3,449 cells
Intercalated Cell Type B3,216 cells
Degenerative Cortical Intercalated Cell Type A3,194 cells
Descending Thin Limb Cell Type 23,130 cells
Outer Medullary Collecting Duct Principal Cell2,897 cells
Non-classical Monocyte2,435 cells
Podocyte2,420 cells
Parietal Epithelial Cell2,417 cells
Ascending Thin Limb Cell2,230 cells
B Cell2,194 cells
Degenerative Connecting Tubule Cell2,178 cells
Myofibroblast2,054 cells
Degenerative Inner Medullary Collecting Duct Cell1,893 cells
Outer Medullary Collecting Duct Intercalated Cell Type A1,845 cells
Afferent / Efferent Arteriole Endothelial Cell1,705 cells
Descending Thin Limb Cell Type 31,550 cells
Adaptive / Maladaptive / Repairing Fibroblast1,516 cells
Degenerative Vascular Smooth Muscle Cell1,461 cells
Transitional Principal-Intercalated Cell1,409 cells
Plasma Cell1,353 cells
Vascular Smooth Muscle Cell1,233 cells
Degenerative Ascending Thin Limb Cell1,154 cells
Neutrophil860 cells
Distal Convoluted Tubule Cell Type 2827 cells
Cycling Proximal Tubule Epithelial Cell809 cells
Degenerative Medullary Fibroblast714 cells
Connecting Tubule Intercalated Cell Type A664 cells
Papillary Tip Epithelial Cell531 cells
Degenerative Fibroblast469 cells
Lymphatic Endothelial Cell463 cells
Mesangial Cell458 cells
Degenerative Podocyte412 cells
Degenerative Descending Thin Limb Cell Type 3406 cells
Mast Cell400 cells
Degenerative Peritubular Capilary Endothelial Cell269 cells
Degenerative Endothelial Cell236 cells
Classical Dendritic Cell216 cells
Cycling Mononuclear Phagocyte215 cells
Cycling Natural Killer Cell / Natural Killer T Cell165 cells
Cycling Endothelial Cell125 cells
Renin-positive Juxtaglomerular Granular Cell106 cells
Schwann Cell / Neural77 cells
Plasmacytoid Dendritic Cell75 cells
Cycling Distal Convoluted Tubule Cell75 cells
Cycling Connecting Tubule Cell68 cells
Cycling Myofibroblast66 cells
aPT26,027 cells
dPT25,023 cells
C-TAL23,767 cells
PT-S1/217,623 cells
dM-TAL11,109 cells
dOMCD-PC9,801 cells
EC-PTC9,195 cells
M-TAL8,876 cells
aTAL17,879 cells
DCT17,763 cells
CCD-IC-A7,673 cells
T7,118 cells
aTAL27,045 cells
CNT7,024 cells
PT-S36,549 cells
M-FIB6,138 cells
FIB5,591 cells
EC-AVR5,132 cells
DTL14,700 cells
dDCT4,551 cells
MDC4,441 cells
CCD-PC4,361 cells
IMCD4,287 cells
EC-DVR4,286 cells
NKC/T4,201 cells
MD4,115 cells
CNT-PC3,975 cells
EC-GC3,764 cells
MAC-M23,533 cells
dC-TAL3,466 cells
VSMC/P3,449 cells
IC-B3,216 cells
dC-IC-A3,194 cells
DTL23,130 cells
OMCD-PC2,897 cells
ncMON2,435 cells
POD2,420 cells
PEC2,417 cells
ATL2,230 cells
B2,194 cells
dCNT2,178 cells
MYOF2,054 cells
dIMCD1,893 cells
OMCD-IC-A1,845 cells
EC-AEA1,705 cells
DTL31,550 cells
aFIB1,516 cells
dVSMC1,461 cells
tPC-IC1,409 cells
PL1,353 cells
VSMC1,233 cells
dATL1,154 cells
N860 cells
DCT2827 cells
cycPT809 cells
dM-FIB714 cells
CNT-IC-A664 cells
PapE531 cells
dFIB469 cells
EC-LYM463 cells
MC458 cells
dPOD412 cells
dDTL3406 cells
MAST400 cells
dEC-PTC269 cells
dEC236 cells
cDC216 cells
cycMNP215 cells
cycNKC/T165 cells
cycEC125 cells
REN106 cells
SC/NEU77 cells
pDC75 cells
cycDCT75 cells
cycCNT68 cells
cycMYOF66 cells
aPT26,027 cells
dPT25,023 cells
C-TAL23,767 cells
PT-S1/217,623 cells
dM-TAL11,109 cells
CNT10,999 cells
dM-PC9,801 cells
EC-PTC9,195 cells
M-TAL8,876 cells
DCT8,590 cells
C-IC-A8,337 cells
aTAL17,879 cells
T7,118 cells
aTAL27,045 cells
PT-S36,549 cells
M-FIB6,138 cells
FIB5,591 cells
EC-AVR5,132 cells
DTL14,700 cells
dDCT4,551 cells
MDC4,441 cells
C-PC4,361 cells
IMCD4,287 cells
EC-DVR4,286 cells
NKC/T4,201 cells
MD4,115 cells
EC-GC3,764 cells
MAC-M23,533 cells
dC-TAL3,466 cells
VSMC/P3,449 cells
IC-B3,216 cells
dC-IC-A3,194 cells
DTL23,130 cells
M-PC2,897 cells
ncMON2,435 cells
POD2,420 cells
PEC2,417 cells
ATL2,230 cells
B2,194 cells
dCNT2,178 cells
MYOF2,054 cells
dIMCD1,893 cells
M-IC-A1,845 cells
EC-AEA1,705 cells
DTL31,550 cells
aFIB1,516 cells
dVSMC1,461 cells
tPC-IC1,409 cells
PL1,353 cells
VSMC1,233 cells
dATL1,154 cells
N860 cells
cycPT809 cells
dM-FIB714 cells
PapE531 cells
dFIB469 cells
EC-LYM463 cells
MC458 cells
dPOD412 cells
dDTL3406 cells
MAST400 cells
dEC-PTC269 cells
dEC236 cells
cDC216 cells
cycMNP215 cells
cycNKC/T165 cells
cycEC125 cells
REN106 cells
SC/NEU77 cells
pDC75 cells
cycDCT75 cells
cycCNT68 cells
cycMYOF66 cells
PT76,031 cells
TAL66,257 cells
IMM27,206 cells
EC25,175 cells
PC23,239 cells
IC18,001 cells
FIB16,548 cells
CNT13,245 cells
DCT13,216 cells
DTL9,786 cells
VSM/P6,707 cells
ATL3,384 cells
POD2,832 cells
PEC2,417 cells
PapE531 cells
NEU77 cells
reference190,863 cells
degenerative66,336 cells
adaptive - epi40,951 cells
adaptive - str3,570 cells
cycling1,523 cells
transitioning1,409 cells
reference191,243 cells
altered113,409 cells
epithelial cells228,939 cells
immune cells27,206 cells
endothelial cells25,175 cells
stroma cells23,255 cells
neural cells77 cells
proximal tubules76,031 cells
Distal tubules64,549 cells
Collecting tubules55,016 cells
interstitium50,080 cells
intermediate tubules28,094 cells
vessels21,411 cells
renal corpuscle9,471 cells
>60155,435 cells
50-5952,307 cells
Unassigned39,596 cells
40-4937,431 cells
20-2912,831 cells
30-397,052 cells
Unassigned210,687 cells
25.0—29.947,924 cells
30.0 and Above30,398 cells
18.5—24.915,643 cells
No134,887 cells
Yes114,452 cells
unknown55,313 cells
Yes142,090 cells
No110,244 cells
Unassigned52,318 cells
10x 3' v3, single-nucleus200,338 cells
10x 3' v3104,314 cells
male170,070 cells
female134,582 cells
cortex of kidney122,914 cells
kidney104,314 cells
renal medulla57,086 cells
renal papilla20,338 cells
European201,957 cells
African American55,974 cells
Unassigned32,690 cells
Hispanic or Latin American8,609 cells
Asian5,422 cells
60-6984,310 cells
70-7944,654 cells
50-5928,404 cells
30-3921,570 cells
76 years20,400 cells
66 years11,984 cells
63 years10,807 cells
20-299,555 cells
43 years8,609 cells
70 years8,084 cells
59 years6,488 cells
69 years5,151 cells
29 years5,105 cells
56 years4,952 cells
49 years4,232 cells
53 years2,952 cells
36 years2,891 cells
35 years2,635 cells
57 years2,627 cells
45 years2,468 cells
14 years2,256 cells
54 years2,013 cells
64 years1,661 cells
31 years1,631 cells
42 years1,540 cells
30 years1,334 cells
52 years1,329 cells
41 years1,166 cells
40-49988 cells
39 years962 cells
47 years740 cells
40 years635 cells
48 years519 cells
60-69113,913 cells
70-7973,138 cells
50-5948,765 cells
30-3931,023 cells
40-4920,897 cells
20-2914,660 cells
10-172,256 cells
Cluster 377,784 cells
Cluster 151,573 cells
Cluster 538,177 cells
Cluster 230,608 cells
Cluster 1025,415 cells
Cluster 422,575 cells
Cluster 914,184 cells
Cluster 613,552 cells
Cluster 812,707 cells
Cluster 712,603 cells
Cluster 112,808 cells
Cluster 122,666 cells
2. Single-nucleus RNA-seq of the Adult Human Kidney (Version 1.0)
ExploreSample ID
Experiment
Specimen ID
Disease
Disease (level 1)
Disease (level 2)
Subject ID
Tissue region (level 1)
Tissue region (level 2)
Percent of cortex
Percent of medulla
Sample tissue type
Sample source
Cell type
Cell type (subclass l3)
Cell type (subclass l2)
Cell type (subclass l1)
State l2
State
Cell type (class)
Structure
eGFR
BMI
Diabetes history
Hypertension
Assay
Sex
Tissue
Ethnicity
Age
Age group
Leiden clustering
KB813,763 cells
KB58,667 cells
KB48,216 cells
KC797,775 cells
KC787,481 cells
KB77,019 cells
KB166,917 cells
PA36,488 cells
KB136,099 cells
PA46,089 cells
KB16,039 cells
KM1035,815 cells
KC335,744 cells
KM1025,652 cells
KC345,520 cells
KB35,380 cells
KB105,113 cells
KC394,837 cells
KB114,799 cells
KC774,765 cells
KC824,718 cells
KB124,666 cells
KM693,730 cells
KB63,695 cells
KC843,473 cells
KC352,962 cells
KM722,468 cells
KC362,444 cells
KC402,256 cells
KB142,098 cells
KC832,013 cells
PA51,678 cells
KB151,301 cells
KM711,291 cells
KB91,256 cells
KB2352 cells
PA1268 cells
KPMP_20200115B_10X-R13,763 cells
KPMP_20191219C_10X-R8,667 cells
KPMP_20191219B_10X-R8,216 cells
KPMP_20190607K-10X-R7,775 cells
KPMP_20190607J-10X-R7,481 cells
KPMP_20200115A_10X-R7,019 cells
KPMP_20200212H_10X-R6,917 cells
BUKMAP_20200304F_10X-R6,488 cells
KPMP_20200212E_10X-R6,099 cells
BUKMAP_20200702D_10X-R6,089 cells
KPMP_20191204A_10X-R6,039 cells
BUKMAP_20200304B_10X-R5,815 cells
BUKMAP_20190529L_10X-R5,744 cells
BUKMAP_20200304A_10X-R5,652 cells
BUKMAP_20190607L_10X-R5,520 cells
KPMP_20191219A_10X-R5,380 cells
KPMP_20200212B_10X-R5,113 cells
BUKMAP_20191010-10X-R4,837 cells
KPMP_20200212C_10X-R4,799 cells
KPMP_20190607I-10X-R4,765 cells
BUKMAP_20200702C_10X-R4,718 cells
KPMP_20200212D_10X-R4,666 cells
BUKMAP_20200205A_10X-R3,730 cells
KPMP_20191219D_10X-R3,695 cells
BUKMAP_20200707B_10X-R3,473 cells
BUKMAP_20190822F_10X-R2,962 cells
BUKMAP_20200205F_10X-R2,468 cells
BUKMAP_20190829B_10X-R2,444 cells
BUKMAP_20191104A-10X-R2,256 cells
KPMP_20200212F_10X-R2,098 cells
BUKMAP_20200707A_10X-R2,013 cells
BUKMAP_20200707C_10X-R1,678 cells
KPMP_20200212G_10X-R1,301 cells
BUKMAP_20200205D_10X-R1,291 cells
KPMP_20200212A_10X-R1,256 cells
KPMP_20191204B_10X-R352 cells
BUKMAP_20191009-10X-R268 cells
K1900174_216,670 cells
S-1910-000149_R113,763 cells
S-1908-010077_R18,667 cells
S-1908-000858_R18,216 cells
18-312-2-M27,775 cells
18-142-3-M27,481 cells
S-1909-007161_R17,019 cells
S-1910-000196_R16,917 cells
K2000094_2_R16,488 cells
S-1908-009890_R16,099 cells
KRP460P-16,089 cells
S-1908-000952-R16,039 cells
K1900387_4_R15,815 cells
K1900387_1_R15,652 cells
S-1908-009653_R15,380 cells
S-1908-000905_R15,113 cells
446_B34,837 cells
S-1908-009843_R14,799 cells
18-162-2-M24,765 cells
KRP460C-14,718 cells
S-1908-010125_R14,666 cells
K1900175_1_R13,730 cells
S-1910-000055_R13,695 cells
KRP462C-13,473 cells
K1900019_1_R32,468 cells
K1800364_12,256 cells
S-2001-000055_R12,098 cells
KRP461C-12,013 cells
KRP462P-11,678 cells
S-2001-000102_R11,301 cells
K1800430_3_R31,291 cells
S-1908-010172_R11,256 cells
S-1905-017562-R1352 cells
446_B1268 cells
Normal Reference87,467 cells
Acute Kidney Injury (AKI)30,867 cells
Hypertensive CKD (H-CKD)30,787 cells
Diabetic Kidney Disease (DKD)23,726 cells
Ref87,467 cells
CKD54,513 cells
AKI30,867 cells
Ref87,467 cells
AKI30,867 cells
H-CKD30,787 cells
DKD23,726 cells
353520,400 cells
31-1001313,763 cells
359311,467 cells
KRP46010,807 cells
32-100038,667 cells
31-100068,216 cells
18-3127,775 cells
18-1427,481 cells
29-100127,019 cells
31-100356,917 cells
36136,488 cells
33-100066,099 cells
31-100016,039 cells
30-100345,380 cells
KRP4625,151 cells
31-100005,113 cells
KRP4465,105 cells
33-100054,799 cells
18-1624,765 cells
32-100344,666 cells
29-100083,695 cells
35042,468 cells
34902,256 cells
29-100132,098 cells
KRP4612,013 cells
29-100101,301 cells
34991,291 cells
32-21,256 cells
29-10006352 cells
Cortex97,084 cells
Medulla55,425 cells
Papilla20,338 cells
C92,319 cells
M37,376 cells
C-M22,814 cells
P20,338 cells
100.077,921 cells
0.037,936 cells
10.017,310 cells
40.08,137 cells
95.07,481 cells
85.06,917 cells
45.05,113 cells
30.04,799 cells
60.04,765 cells
5.02,468 cells
0.077,921 cells
100.037,936 cells
90.017,310 cells
60.08,137 cells
5.07,481 cells
15.06,917 cells
55.05,113 cells
70.04,799 cells
40.04,765 cells
95.02,468 cells
Biopsy110,712 cells
Nephrectomy42,889 cells
Deceased Donor19,246 cells
reference172,847 cells
Degenerative Proximal Tubule Epithelial Cell16,300 cells
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell13,339 cells
Degenerative Medullary Thick Ascending Limb Cell10,196 cells
Proximal Tubule Epithelial Cell Segment 1 / Segment 28,929 cells
Medullary Thick Ascending Limb Cell8,124 cells
Cortical Thick Ascending Limb Cell8,085 cells
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell6,012 cells
Medullary Fibroblast5,960 cells
Distal Convoluted Tubule Cell Type 15,940 cells
Peritubular Capilary Endothelial Cell5,273 cells
Fibroblast4,858 cells
Proximal Tubule Epithelial Cell Segment 34,700 cells
Inner Medullary Collecting Duct Cell4,129 cells
Cortical Collecting Duct Intercalated Cell Type A3,984 cells
Ascending Vasa Recta Endothelial Cell3,876 cells
Connecting Tubule Cell3,673 cells
Descending Vasa Recta Endothelial Cell3,308 cells
Descending Thin Limb Cell Type 13,220 cells
Degenerative Outer Medullary Collecting Duct Principal Cell3,218 cells
Cortical Collecting Duct Principal Cell3,028 cells
Outer Medullary Collecting Duct Principal Cell2,653 cells
T Cell2,475 cells
Descending Thin Limb Cell Type 22,382 cells
M2 Macrophage2,314 cells
Vascular Smooth Muscle Cell / Pericyte1,926 cells
Podocyte1,925 cells
Myofibroblast1,922 cells
Glomerular Capillary Endothelial Cell1,834 cells
Degenerative Inner Medullary Collecting Duct Cell1,821 cells
Ascending Thin Limb Cell1,799 cells
Macula Densa Cell1,652 cells
Connecting Tubule Principal Cell1,649 cells
Outer Medullary Collecting Duct Intercalated Cell Type A1,622 cells
Monocyte-derived Cell1,604 cells
Intercalated Cell Type B1,501 cells
Descending Thin Limb Cell Type 31,483 cells
Adaptive / Maladaptive / Repairing Fibroblast1,456 cells
Degenerative Cortical Thick Ascending Limb Cell1,355 cells
Parietal Epithelial Cell1,150 cells
Degenerative Ascending Thin Limb Cell1,142 cells
Vascular Smooth Muscle Cell1,026 cells
B Cell813 cells
Degenerative Medullary Fibroblast708 cells
Afferent / Efferent Arteriole Endothelial Cell672 cells
Degenerative Cortical Intercalated Cell Type A654 cells
Distal Convoluted Tubule Cell Type 2516 cells
Degenerative Connecting Tubule Cell507 cells
Plasma Cell486 cells
Natural Killer Cell / Natural Killer T Cell440 cells
Non-classical Monocyte419 cells
Transitional Principal-Intercalated Cell411 cells
Degenerative Descending Thin Limb Cell Type 3406 cells
Cycling Proximal Tubule Epithelial Cell357 cells
Mesangial Cell352 cells
Papillary Tip Epithelial Cell326 cells
Lymphatic Endothelial Cell292 cells
Mast Cell290 cells
Degenerative Peritubular Capilary Endothelial Cell252 cells
Neutrophil236 cells
Connecting Tubule Intercalated Cell Type A230 cells
Degenerative Vascular Smooth Muscle Cell210 cells
Degenerative Fibroblast203 cells
Degenerative Podocyte194 cells
Degenerative Endothelial Cell179 cells
Degenerative Distal Convoluted Tubule Cell154 cells
Classical Dendritic Cell143 cells
Cycling Mononuclear Phagocyte108 cells
Cycling Endothelial Cell93 cells
Cycling Distal Convoluted Tubule Cell68 cells
Cycling Myofibroblast64 cells
Schwann Cell / Neural59 cells
Renin-positive Juxtaglomerular Granular Cell55 cells
Cycling Connecting Tubule Cell54 cells
Plasmacytoid Dendritic Cell53 cells
dPT16,300 cells
aPT13,339 cells
dM-TAL10,196 cells
PT-S1/28,929 cells
M-TAL8,124 cells
C-TAL8,085 cells
M-FIB5,960 cells
DCT15,940 cells
aTAL15,452 cells
EC-PTC5,273 cells
FIB4,858 cells
PT-S34,700 cells
IMCD4,129 cells
CCD-IC-A3,984 cells
EC-AVR3,876 cells
CNT3,673 cells
EC-DVR3,308 cells
DTL13,220 cells
dOMCD-PC3,218 cells
CCD-PC3,028 cells
OMCD-PC2,653 cells
T2,475 cells
DTL22,382 cells
MAC-M22,314 cells
VSMC/P1,926 cells
POD1,925 cells
MYOF1,922 cells
EC-GC1,834 cells
dIMCD1,821 cells
ATL1,799 cells
MD1,652 cells
CNT-PC1,649 cells
OMCD-IC-A1,622 cells
MDC1,604 cells
IC-B1,501 cells
DTL31,483 cells
aFIB1,456 cells
dC-TAL1,355 cells
PEC1,150 cells
dATL1,142 cells
VSMC1,026 cells
B813 cells
dM-FIB708 cells
EC-AEA672 cells
dC-IC-A654 cells
aTAL2560 cells
DCT2516 cells
dCNT507 cells
PL486 cells
NKC/T440 cells
ncMON419 cells
tPC-IC411 cells
dDTL3406 cells
cycPT357 cells
MC352 cells
PapE326 cells
EC-LYM292 cells
MAST290 cells
dEC-PTC252 cells
N236 cells
CNT-IC-A230 cells
dVSMC210 cells
dFIB203 cells
dPOD194 cells
dEC179 cells
dDCT154 cells
cDC143 cells
cycMNP108 cells
cycEC93 cells
cycDCT68 cells
cycMYOF64 cells
SC/NEU59 cells
REN55 cells
cycCNT54 cells
pDC53 cells
dPT16,300 cells
aPT13,339 cells
dM-TAL10,196 cells
PT-S1/28,929 cells
M-TAL8,124 cells
C-TAL8,085 cells
DCT6,456 cells
M-FIB5,960 cells
aTAL15,452 cells
CNT5,322 cells
EC-PTC5,273 cells
FIB4,858 cells
PT-S34,700 cells
C-IC-A4,214 cells
IMCD4,129 cells
EC-AVR3,876 cells
EC-DVR3,308 cells
DTL13,220 cells
dM-PC3,218 cells
C-PC3,028 cells
M-PC2,653 cells
T2,475 cells
DTL22,382 cells
MAC-M22,314 cells
VSMC/P1,926 cells
POD1,925 cells
MYOF1,922 cells
EC-GC1,834 cells
dIMCD1,821 cells
ATL1,799 cells
MD1,652 cells
M-IC-A1,622 cells
MDC1,604 cells
IC-B1,501 cells
DTL31,483 cells
aFIB1,456 cells
dC-TAL1,355 cells
PEC1,150 cells
dATL1,142 cells
VSMC1,026 cells
B813 cells
dM-FIB708 cells
EC-AEA672 cells
dC-IC-A654 cells
aTAL2560 cells
dCNT507 cells
PL486 cells
NKC/T440 cells
ncMON419 cells
tPC-IC411 cells
dDTL3406 cells
cycPT357 cells
MC352 cells
PapE326 cells
EC-LYM292 cells
MAST290 cells
dEC-PTC252 cells
N236 cells
dVSMC210 cells
dFIB203 cells
dPOD194 cells
dEC179 cells
dDCT154 cells
cDC143 cells
cycMNP108 cells
cycEC93 cells
cycDCT68 cells
cycMYOF64 cells
SC/NEU59 cells
REN55 cells
cycCNT54 cells
pDC53 cells
PT43,625 cells
TAL35,424 cells
EC15,779 cells
FIB15,171 cells
PC14,849 cells
IMM9,381 cells
IC8,402 cells
DTL7,491 cells
DCT6,678 cells
CNT5,883 cells
VSM/P3,569 cells
ATL2,941 cells
POD2,119 cells
PEC1,150 cells
PapE326 cells
NEU59 cells
reference111,464 cells
degenerative37,499 cells
adaptive - epi19,351 cells
adaptive - str3,378 cells
cycling744 cells
transitioning411 cells
reference111,572 cells
altered61,275 cells
epithelial cells128,888 cells
stroma cells18,740 cells
endothelial cells15,779 cells
immune cells9,381 cells
neural cells59 cells
proximal tubules43,625 cells
Distal tubules36,090 cells
Collecting tubules29,460 cells
interstitium27,828 cells
intermediate tubules16,444 cells
vessels13,945 cells
renal corpuscle5,455 cells
>6087,280 cells
50-5942,379 cells
Unassigned20,021 cells
40-4918,054 cells
20-295,113 cells
Unassigned105,401 cells
25.0—29.931,867 cells
30.0 and Above23,076 cells
18.5—24.912,503 cells
No86,832 cells
Yes50,082 cells
unknown35,933 cells
Yes74,403 cells
No62,511 cells
Unassigned35,933 cells
10x 3' v3, single-nucleus172,847 cells
male106,679 cells
female66,168 cells
cortex of kidney97,084 cells
renal medulla55,425 cells
renal papilla20,338 cells
European128,009 cells
Unassigned28,688 cells
African American14,849 cells
Asian1,301 cells
60-6951,091 cells
70-7927,412 cells
76 years20,400 cells
50-5912,132 cells
66 years11,467 cells
63 years10,807 cells
30-398,667 cells
59 years6,488 cells
20-296,099 cells
69 years5,151 cells
29 years5,105 cells
45 years2,468 cells
14 years2,256 cells
54 years2,013 cells
57 years1,291 cells
60-6978,516 cells
70-7947,812 cells
50-5921,924 cells
20-2911,204 cells
30-398,667 cells
40-492,468 cells
10-172,256 cells
Cluster 1418,140 cells
Cluster 1217,938 cells
Cluster 417,231 cells
Cluster 313,719 cells
Cluster 2013,621 cells
Cluster 911,510 cells
Cluster 19,882 cells
Cluster 118,352 cells
Cluster 158,186 cells
Cluster 28,012 cells
Cluster 86,693 cells
Cluster 106,380 cells
Cluster 66,367 cells
Cluster 196,234 cells
Cluster 54,614 cells
Cluster 163,838 cells
Cluster 73,592 cells
Cluster 213,116 cells
Cluster 182,015 cells
Cluster 241,453 cells
Cluster 131,115 cells
Cluster 22345 cells
Cluster 23244 cells
Cluster 25131 cells
Cluster 17119 cells
3. Single-cell RNA-seq of the Adult Human Kidney (Version 1.0)
ExploreTissue region (level 2)
Tissue region (level 1)
Data source
Sample type
Clustering
Tissue type
Cell type (subclass)
eGFR
BMI
Diabetes history
Hypertension
Specimen ID
Subject ID
Sex
Ethnicity
Age
Sample ID
Experiment
Disease
Disease (level 1)
Disease (level 2)
Percent of cortex
Percent of medulla
Sample tissue type
Sample source
Cell type
Cell type (subclass l3)
Cell type (subclass l2)
Cell type (subclass l1)
State l2
State
Cell type (class)
Structure
Assay
Tissue
Age group
Leiden clustering
C-TAL15,036 cells
aPT9,707 cells
PT-S1/S26,787 cells
aTAL26,523 cells
dPT5,705 cells
PC4,664 cells
T4,264 cells
EC-PTC4,089 cells
IC-A3,284 cells
DCT13,126 cells
dCNT-PC3,082 cells
CNT3,068 cells
dPT/DTL2,394 cells
dPC2,274 cells
CNT-IC-A1,977 cells
dCNT1,850 cells
dC-TAL1,812 cells
EC-AEA1,706 cells
cDC1,684 cells
DTL11,653 cells
tPC-IC1,649 cells
dDCT1,553 cells
EC-GC1,405 cells
MON1,322 cells
MDC1,318 cells
NKT1,246 cells
VSMC/P1,196 cells
B1,125 cells
M-TAL1,053 cells
aTAL11,008 cells
T-CYT915 cells
MAC-M2879 cells
dVSMC830 cells
NK1774 cells
FIB687 cells
IC-B649 cells
PEC623 cells
CNT-PC547 cells
dIC-A425 cells
PL406 cells
ncMON364 cells
dEC-PTC258 cells
POD242 cells
T-REG238 cells
cycT231 cells
cycEPI218 cells
cycMNP206 cells
pDC206 cells
NK2203 cells
PT-S3174 cells
aFIB173 cells
REN163 cells
MC130 cells
EC-LYM103 cells
MyoF73 cells
cycEC39 cells
MAST28 cells
PT24,985 cells
TAL17,901 cells
Immune15,409 cells
PC12,216 cells
EC7,600 cells
ATL/TAL7,531 cells
IC6,335 cells
CNT4,918 cells
DCT4,679 cells
Interstitial3,252 cells
DTL1,653 cells
PEC623 cells
POD242 cells
KPMP86,847 cells
UMICH20,497 cells
DKD41,515 cells
AKI34,991 cells
LD20,497 cells
HCKD10,341 cells
Cluster 515,036 cells
Cluster 547,434 cells
Cluster 176,787 cells
Cluster 256,523 cells
Cluster 185,705 cells
Cluster 354,664 cells
Cluster 324,264 cells
Cluster 464,089 cells
Cluster 493,284 cells
Cluster 33,126 cells
Cluster 513,082 cells
Cluster 43,068 cells
Cluster 382,394 cells
Cluster 102,274 cells
Cluster 112,273 cells
Cluster 521,977 cells
Cluster 331,850 cells
Cluster 261,812 cells
Cluster 361,706 cells
Cluster 231,684 cells
Cluster 121,653 cells
Cluster 501,649 cells
Cluster 271,553 cells
Cluster 561,405 cells
Cluster 201,322 cells
Cluster 221,318 cells
Cluster 411,246 cells
Cluster 71,196 cells
Cluster 281,125 cells
Cluster 61,053 cells
Cluster 21,008 cells
Cluster 30915 cells
Cluster 21879 cells
Cluster 14830 cells
Cluster 42774 cells
Cluster 37687 cells
Cluster 48649 cells
Cluster 39623 cells
Cluster 34547 cells
Cluster 53425 cells
Cluster 1406 cells
Cluster 19364 cells
Cluster 47258 cells
Cluster 13242 cells
Cluster 31238 cells
Cluster 40231 cells
Cluster 55218 cells
Cluster 44206 cells
Cluster 24206 cells
Cluster 29203 cells
Cluster 16174 cells
Cluster 58173 cells
Cluster 8163 cells
Cluster 15130 cells
Cluster 43103 cells
Cluster 5773 cells
Cluster 4539 cells
Cluster 928 cells
disease biopsy86,847 cells
LD20,497 cells
C-TAL15,036 cells
aPT9,707 cells
PT-S1/S26,787 cells
aTAL26,523 cells
dPT5,705 cells
PC4,664 cells
T4,264 cells
EC-PTC4,089 cells
IC-A3,284 cells
DCT13,126 cells
dCNT-PC3,082 cells
CNT3,068 cells
dPT/DTL2,394 cells
dPC2,274 cells
CNT-IC-A1,977 cells
dCNT1,850 cells
dC-TAL1,812 cells
EC-AEA1,706 cells
cDC1,684 cells
DTL11,653 cells
tPC-IC1,649 cells
dDCT1,553 cells
EC-GC1,405 cells
MON1,322 cells
MDC1,318 cells
NKT1,246 cells
VSMC/P1,196 cells
B1,125 cells
M-TAL1,053 cells
aTAL11,008 cells
T-CYT915 cells
MAC-M2879 cells
dVSMC830 cells
NK1774 cells
FIB687 cells
IC-B649 cells
PEC623 cells
CNT-PC547 cells
dIC-A425 cells
PL406 cells
ncMON364 cells
dEC-PTC258 cells
POD242 cells
T-REG238 cells
cycT231 cells
cycEPI218 cells
cycMNP206 cells
pDC206 cells
NK2203 cells
PT-S3174 cells
aFIB173 cells
REN163 cells
MC130 cells
EC-LYM103 cells
MyoF73 cells
cycEC39 cells
MAST28 cells
>6069,258 cells
40-4916,907 cells
20-297,225 cells
30-397,171 cells
50-596,783 cells
unknown88,484 cells
25.0—29.913,001 cells
30.0 and Above4,361 cells
18.5—24.91,498 cells
Yes55,523 cells
No47,081 cells
unknown4,740 cells
Yes63,734 cells
No43,610 cells
S-1905-0175559,175 cells
S-1908-0098366,302 cells
S-1908-0008986,107 cells
S-1909-0071545,746 cells
S-1908-0100244,740 cells
S-1904-0081344,358 cells
S-2001-0054094,247 cells
S-2001-0000954,185 cells
S-1908-0007574,158 cells
S-2001-0001423,954 cells
S-1908-0097403,641 cells
S-1903-0054713,272 cells
S-2002-0077483,255 cells
S-2001-0000482,837 cells
S-1908-0100712,722 cells
S-1910-0000952,712 cells
S-1904-0072982,653 cells
S-1910-0001422,425 cells
S-1910-0001892,162 cells
S-1910-0000481,809 cells
PRE0271,637 cells
PRE0381,559 cells
S-1908-0101181,437 cells
Sample1162-EO21,345 cells
Sample1153-EO31,338 cells
PRE98sc1,337 cells
PRE019-41,330 cells
Sample1157-EO21,204 cells
S-1908-0096461,155 cells
S-2001-0194181,118 cells
Sample1157-EO11,045 cells
S-1908-0009451,009 cells
PRE19-0251,000 cells
S-1908-009787992 cells
Sample1158-EO2985 cells
Sample1162-EO1982 cells
Sample1158-EO3974 cells
PRE018-1965 cells
Sample1153-EO2851 cells
Sample1153-EO1834 cells
Sample1157-EO3779 cells
PRE062-1647 cells
PRE19-05641 cells
Sample1158-EO1524 cells
PRE055-1520 cells
S-1908-009883464 cells
S-1905-018690212 cells
29-100069,175 cells
33-100056,302 cells
31-100006,107 cells
29-100125,746 cells
32-100744,740 cells
34-100504,358 cells
31-100404,247 cells
29-100104,185 cells
27-100394,158 cells
29-100163,954 cells
30-100183,641 cells
34-101873,272 cells
30-101253,255 cells
PRE0192,971 cells
29-100132,837 cells
32-100032,722 cells
29-100112,712 cells
34-101842,653 cells
31-100132,425 cells
31-100352,162 cells
29-100081,809 cells
PRE0271,637 cells
PRE0381,559 cells
32-100341,437 cells
Sample1162-EO21,345 cells
Sample1153-EO31,338 cells
PRE98sc1,337 cells
Sample1157-EO21,204 cells
30-100341,155 cells
31-100421,118 cells
Sample1157-EO11,045 cells
31-100011,009 cells
30-10123992 cells
Sample1158-EO2985 cells
Sample1162-EO1982 cells
Sample1158-EO3974 cells
PRE018-1965 cells
Sample1153-EO2851 cells
Sample1153-EO1834 cells
Sample1157-EO3779 cells
PRE062-1647 cells
Sample1158-EO1524 cells
PRE055-1520 cells
33-10006464 cells
28-10051212 cells
female59,960 cells
male47,384 cells
European68,193 cells
African American30,907 cells
Asian4,185 cells
unknown4,059 cells
60-6933,831 cells
50-5917,761 cells
70-7917,498 cells
30-3913,029 cells
20-293,736 cells
53 years2,971 cells
35 years2,659 cells
56 years1,950 cells
31 years1,637 cells
42 years1,559 cells
52 years1,345 cells
30 years1,338 cells
57 years1,337 cells
41 years1,204 cells
49 years1,045 cells
40-49992 cells
39 years982 cells
47 years779 cells
40 years647 cells
48 years524 cells
66 years520 cells
763-EO-16,110 cells
573-EO-25,463 cells
269-EO-14,953 cells
2318-EO-24,690 cells
1119-EO-24,333 cells
613-EO-24,173 cells
2318-EO-34,121 cells
1117-EO-24,053 cells
1120-EO-23,936 cells
763-EO-33,858 cells
1121-EO-23,634 cells
345-EO-33,239 cells
Unassigned3,030 cells
1120-EO-12,996 cells
573-EO-12,944 cells
2318-EO-12,834 cells
1121-EO-32,667 cells
763-EO-22,666 cells
622-EO-22,617 cells
269-EO-22,396 cells
622-EO-12,225 cells
763-EO-42,153 cells
1117-EO-11,724 cells
PRE0271,631 cells
PRE0381,540 cells
613-EO-11,426 cells
PRE98sc1,336 cells
1153EO-31,334 cells
1162EO-21,329 cells
PRE019-41,323 cells
1157EO-21,166 cells
1121-EO-11,145 cells
1119-EO-11,104 cells
1157EO-11,042 cells
PRE19-025994 cells
141361988 cells
PRE018-1963 cells
1162EO-1962 cells
593-EO-1960 cells
1158EO-3958 cells
1158EO-2933 cells
1153EO-2844 cells
1153EO-1833 cells
1157EO-3740 cells
PRE062-1635 cells
PRE19-05635 cells
1158EO-1519 cells
PRE055-1517 cells
1120-EO-3460 cells
593-EO-2212 cells
PREMIERE86,110 cells
PREMIERE205,463 cells
PREMIERE284,953 cells
PREMIERE74,690 cells
PREMIERE104,333 cells
PREMIERE254,173 cells
PREMIERE184,121 cells
PREMIERE134,053 cells
PREMIERE223,936 cells
PREMIERE173,858 cells
PREMIERE13,634 cells
PREMIERE43,239 cells
Unassigned3,030 cells
PREMIERE122,996 cells
PREMIERE152,944 cells
PREMIERE212,834 cells
PREMIERE192,667 cells
PREMIERE52,666 cells
PREMIERE112,617 cells
PREMIERE292,396 cells
PREMIERE162,225 cells
PREMIERE242,153 cells
PREMIERE271,724 cells
PREMIERE321,631 cells
PREMIERE331,540 cells
PREMIERE61,426 cells
PREMIERE381,336 cells
PREMIERE411,334 cells
PREMIERE491,329 cells
PREMIERE311,323 cells
PREMIERE431,166 cells
PREMIERE21,145 cells
PREMIERE261,104 cells
PREMIERE421,042 cells
PREMIERE36994 cells
PREMIERE3988 cells
PREMIERE30963 cells
PREMIERE48962 cells
PREMIERE23960 cells
PREMIERE47958 cells
PREMIERE46933 cells
PREMIERE40844 cells
PREMIERE39833 cells
PREMIERE44740 cells
PREMIERE37635 cells
PREMIERE35635 cells
PREMIERE45519 cells
PREMIERE34517 cells
PREMIERE9460 cells
PREMIERE14212 cells
Diabetic Kidney Disease (DKD)40,703 cells
Acute Kidney Injury (AKI)34,991 cells
Normal Reference20,497 cells
Hypertensive CKD (H-CKD)11,153 cells
CKD51,856 cells
AKI34,991 cells
Ref20,497 cells
DKD40,703 cells
AKI34,991 cells
Ref20,497 cells
H-CKD11,153 cells
Unassigned107,344 cells
Unassigned107,344 cells
Biopsy104,314 cells
Unassigned3,030 cells
query104,314 cells
Unassigned3,030 cells
Cortical Thick Ascending Limb Cell13,849 cells
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell10,315 cells
Degenerative Proximal Tubule Epithelial Cell6,879 cells
Degenerative Outer Medullary Collecting Duct Principal Cell6,299 cells
Proximal Tubule Epithelial Cell Segment 1 / Segment 25,933 cells
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell5,486 cells
Degenerative Distal Convoluted Tubule Cell4,356 cells
T Cell4,132 cells
Natural Killer Cell / Natural Killer T Cell3,644 cells
Peritubular Capilary Endothelial Cell3,164 cells
Unassigned3,030 cells
Cortical Collecting Duct Intercalated Cell Type A2,835 cells
Connecting Tubule Cell2,637 cells
Monocyte-derived Cell2,521 cells
Degenerative Cortical Intercalated Cell Type A2,382 cells
Macula Densa Cell2,051 cells
Connecting Tubule Principal Cell2,021 cells
Non-classical Monocyte1,839 cells
Degenerative Connecting Tubule Cell1,623 cells
Glomerular Capillary Endothelial Cell1,490 cells
Vascular Smooth Muscle Cell / Pericyte1,416 cells
B Cell1,298 cells
Intercalated Cell Type B1,274 cells
Degenerative Vascular Smooth Muscle Cell1,247 cells
Descending Thin Limb Cell Type 11,206 cells
Ascending Vasa Recta Endothelial Cell1,091 cells
Parietal Epithelial Cell992 cells
Transitional Principal-Intercalated Cell979 cells
Afferent / Efferent Arteriole Endothelial Cell961 cells
M2 Macrophage848 cells
Descending Vasa Recta Endothelial Cell830 cells
Proximal Tubule Epithelial Cell Segment 3809 cells
Plasma Cell715 cells
Cortical Collecting Duct Principal Cell610 cells
Neutrophil599 cells
Descending Thin Limb Cell Type 2557 cells
Medullary Thick Ascending Limb Cell511 cells
Degenerative Cortical Thick Ascending Limb Cell493 cells
Distal Convoluted Tubule Cell Type 1452 cells
Ascending Thin Limb Cell427 cells
Cycling Proximal Tubule Epithelial Cell423 cells
Connecting Tubule Intercalated Cell Type A410 cells
Degenerative Medullary Thick Ascending Limb Cell328 cells
Distal Convoluted Tubule Cell Type 2248 cells
Degenerative Fibroblast217 cells
Outer Medullary Collecting Duct Intercalated Cell Type A209 cells
Outer Medullary Collecting Duct Principal Cell203 cells
Papillary Tip Epithelial Cell202 cells
Degenerative Podocyte185 cells
Cycling Natural Killer Cell / Natural Killer T Cell165 cells
Inner Medullary Collecting Duct Cell139 cells
Lymphatic Endothelial Cell113 cells
Podocyte92 cells
Vascular Smooth Muscle Cell87 cells
Fibroblast87 cells
Cycling Mononuclear Phagocyte76 cells
Mast Cell65 cells
Mesangial Cell64 cells
Descending Thin Limb Cell Type 355 cells
Adaptive / Maladaptive / Repairing Fibroblast48 cells
Renin-positive Juxtaglomerular Granular Cell45 cells
Classical Dendritic Cell31 cells
Cycling Endothelial Cell20 cells
Degenerative Endothelial Cell11 cells
Myofibroblast9 cells
Medullary Fibroblast6 cells
Schwann Cell / Neural5 cells
C-TAL13,849 cells
aPT10,315 cells
dPT6,879 cells
dOMCD-PC6,299 cells
PT-S1/25,933 cells
aTAL24,596 cells
dDCT4,356 cells
T4,132 cells
NKC/T3,644 cells
EC-PTC3,164 cells
Unassigned3,030 cells
CCD-IC-A2,835 cells
CNT2,637 cells
MDC2,521 cells
dC-IC-A2,382 cells
MD2,051 cells
CNT-PC2,021 cells
ncMON1,839 cells
dCNT1,623 cells
EC-GC1,490 cells
VSMC/P1,416 cells
B1,298 cells
IC-B1,274 cells
dVSMC1,247 cells
DTL11,206 cells
EC-AVR1,091 cells
PEC992 cells
tPC-IC979 cells
EC-AEA961 cells
aTAL1890 cells
MAC-M2848 cells
EC-DVR830 cells
PT-S3809 cells
PL715 cells
CCD-PC610 cells
N599 cells
DTL2557 cells
M-TAL511 cells
dC-TAL493 cells
DCT1452 cells
ATL427 cells
cycPT423 cells
CNT-IC-A410 cells
dM-TAL328 cells
DCT2248 cells
dFIB217 cells
OMCD-IC-A209 cells
OMCD-PC203 cells
PapE202 cells
dPOD185 cells
cycNKC/T165 cells
IMCD139 cells
EC-LYM113 cells
POD92 cells
FIB87 cells
VSMC87 cells
cycMNP76 cells
MAST65 cells
MC64 cells
DTL355 cells
aFIB48 cells
REN45 cells
cDC31 cells
cycEC20 cells
dEC11 cells
MYOF9 cells
M-FIB6 cells
SC/NEU5 cells
C-TAL13,849 cells
aPT10,315 cells
dPT6,879 cells
dM-PC6,299 cells
PT-S1/25,933 cells
CNT4,658 cells
aTAL24,596 cells
dDCT4,356 cells
T4,132 cells
NKC/T3,644 cells
C-IC-A3,245 cells
EC-PTC3,164 cells
Unassigned3,030 cells
MDC2,521 cells
dC-IC-A2,382 cells
MD2,051 cells
ncMON1,839 cells
dCNT1,623 cells
EC-GC1,490 cells
VSMC/P1,416 cells
B1,298 cells
IC-B1,274 cells
dVSMC1,247 cells
DTL11,206 cells
EC-AVR1,091 cells
PEC992 cells
tPC-IC979 cells
EC-AEA961 cells
aTAL1890 cells
MAC-M2848 cells
EC-DVR830 cells
PT-S3809 cells
PL715 cells
DCT700 cells
C-PC610 cells
N599 cells
DTL2557 cells
M-TAL511 cells
dC-TAL493 cells
ATL427 cells
cycPT423 cells
dM-TAL328 cells
dFIB217 cells
M-IC-A209 cells
M-PC203 cells
PapE202 cells
dPOD185 cells
cycNKC/T165 cells
IMCD139 cells
EC-LYM113 cells
POD92 cells
FIB87 cells
VSMC87 cells
cycMNP76 cells
MAST65 cells
MC64 cells
DTL355 cells
aFIB48 cells
REN45 cells
cDC31 cells
cycEC20 cells
dEC11 cells
MYOF9 cells
M-FIB6 cells
SC/NEU5 cells
PT24,359 cells
TAL22,718 cells
IMM15,933 cells
IC8,089 cells
EC7,680 cells
PC7,251 cells
CNT6,281 cells
DCT5,056 cells
Unassigned3,030 cells
VSM/P2,859 cells
DTL1,818 cells
PEC992 cells
ATL427 cells
FIB367 cells
POD277 cells
PapE202 cells
NEU5 cells
reference62,773 cells
degenerative24,020 cells
adaptive - epi15,801 cells
Unassigned3,030 cells
transitioning979 cells
cycling684 cells
adaptive - str57 cells
reference63,014 cells
altered41,300 cells
Unassigned3,030 cells
epithelial cells80,489 cells
immune cells15,942 cells
endothelial cells7,682 cells
stroma cells3,226 cells
neural cells5 cells
proximal tubules24,359 cells
Distal tubules22,288 cells
Collecting tubules21,823 cells
interstitium19,100 cells
intermediate tubules7,731 cells
vessels6,190 cells
Unassigned3,030 cells
renal corpuscle2,823 cells
10x 3' v3107,344 cells
kidney107,344 cells
60-6934,351 cells
50-5925,364 cells
30-3919,645 cells
70-7917,498 cells
40-496,750 cells
20-293,736 cells
Cluster 617,752 cells
Cluster 215,349 cells
Cluster 914,890 cells
Cluster 18,983 cells
Cluster 57,793 cells
Cluster 47,642 cells
Cluster 107,444 cells
Cluster 117,006 cells
Cluster 35,915 cells
Cluster 74,999 cells
Cluster 123,250 cells
Cluster 181,352 cells
Cluster 161,299 cells
Cluster 131,123 cells
Cluster 141,069 cells
Cluster 8638 cells
Cluster 15599 cells
Cluster 17241 cells
4. Patient 20-576 [Slide-seq2]
ExploreCell type
Cell type (level 2)
Sample ID
Leiden clustering
Subject ID
Specimen ID
Assay
Disease
Tissue annotation (level 1)
Tissue annotation (level 2)
Sex
Tissue type
Sample source
Tissue
Reference genome
Age group
l1.TAL36,176 cells
l1.FIB27,880 cells
l1.PT26,903 cells
l1.TL14,343 cells
l1.EC12,244 cells
l1.IMM10,698 cells
l1.PC7,701 cells
l1.VSM/P7,031 cells
l1.IC6,733 cells
l1.DCT5,025 cells
l1.CNT4,998 cells
l1.POD4,488 cells
l1.PEC2,883 cells
Unassigned33,495 cells
l2.M-TAL25,863 cells
l2.M-FIB11,941 cells
l2.PT-S19,340 cells
l2.PT-S27,976 cells
l2.DTL17,115 cells
l2.FIB6,411 cells
l2.C-TAL4,843 cells
l2.POD3,373 cells
l2.DCT3,277 cells
l2.C-PC3,093 cells
l2.CNT2,997 cells
l2.VSMC/P2,716 cells
l2.EC-AVR2,394 cells
l2.PT-S32,321 cells
l2.DTL22,259 cells
l2.C-IC-A2,089 cells
l2.PEC1,871 cells
l2.MDC1,850 cells
l2.M-PC1,732 cells
l2.MYOF1,642 cells
l2.cycMYOF1,608 cells
l2.ncMON1,596 cells
l2.EC-DVR1,546 cells
l2.aPT1,421 cells
l2.EC-GC1,385 cells
l2.EC-PTC1,342 cells
l2.M-IC-A1,232 cells
l2.DTL31,193 cells
l2.MAC-M21,091 cells
l2.TAL1,087 cells
l2.EC-AEA1,023 cells
l2.VSMC972 cells
l2.IMCD897 cells
l2.IMM850 cells
l2.IC-B791 cells
l2.aTAL1755 cells
l2.EC741 cells
l2.aFIB739 cells
l2.T695 cells
l2.TL647 cells
l2.PT580 cells
l2.ATL554 cells
l2.MD552 cells
l2.cDC498 cells
l2.NKT494 cells
l2.cycCNT488 cells
l2.cycEC465 cells
l2.MC402 cells
l2.VSM/P387 cells
l2.IC377 cells
l2.cycDCT377 cells
l2.cycMNP343 cells
l2.tPC-IC274 cells
l2.REN272 cells
l2.PC268 cells
l2.pDC136 cells
l2.MAST125 cells
l2.EC-LYM105 cells
l2.cycPT100 cells
l2.PL97 cells
GSM6128252_Puck_201229_0726,724 cells
GSM6128255_Puck_201229_1124,056 cells
GSM6128254_Puck_201229_1023,944 cells
GSM6128253_Puck_201229_0821,569 cells
GSM6128248_Puck_201229_0313,586 cells
GSM6128250_Puck_201229_0511,347 cells
GSM6128251_Puck_201229_0611,300 cells
GSM6128249_Puck_201229_0410,331 cells
GSM6128247_Puck_201229_0210,267 cells
GSM6128256_Puck_201229_129,824 cells
GSM6128246_Puck_201229_014,155 cells
Cluster 1128,228 cells
Cluster 1323,655 cells
Cluster 721,575 cells
Cluster 115,020 cells
Cluster 149,929 cells
Cluster 29,499 cells
Cluster 49,050 cells
Cluster 56,480 cells
Cluster 66,386 cells
Cluster 86,369 cells
Cluster 126,125 cells
Cluster 95,003 cells
Cluster 104,907 cells
Cluster 154,591 cells
Cluster 173,773 cells
Cluster 32,710 cells
Cluster 161,831 cells
Cluster 181,709 cells
Cluster 19263 cells
Patient 20-576167,103 cells
Puck_201229_0726,724 cells
Puck_201229_1124,056 cells
Puck_201229_1023,944 cells
Puck_201229_0821,569 cells
Puck_201229_0313,586 cells
Puck_201229_0511,347 cells
Puck_201229_0611,300 cells
Puck_201229_0410,331 cells
Puck_201229_0210,267 cells
Puck_201229_129,824 cells
Puck_201229_014,155 cells
SLIDE-Seq2167,103 cells
Normal reference167,103 cells
Medulla106,117 cells
Cortex60,986 cells
Outer Medulla106,117 cells
Unassigned60,986 cells
M167,103 cells
Nephrectomy167,103 cells
KPMP167,103 cells
kidney167,103 cells
GRCh38167,103 cells
adult167,103 cells
5. Patient 21-019 [Slide-seq2]
ExploreCell type
Cell type (level 2)
Sample ID
Leiden clustering
Specimen ID
Assay
Disease
Subject ID
Tissue annotation level 1
Tissue annotation level 2
Sex
Tissue type
Sample source
GEO accession
Reference genome
Age group
Tissue
l1.TAL51,878 cells
l1.PT46,844 cells
l1.TL24,850 cells
l1.FIB21,849 cells
l1.EC15,998 cells
l1.IMM12,869 cells
l1.PC12,485 cells
l1.VSM/P11,311 cells
l1.DCT8,338 cells
l1.IC6,582 cells
l1.CNT3,846 cells
l1.PEC3,553 cells
l1.POD2,472 cells
l2.M-TAL40,803 cells
Unassigned37,753 cells
l2.PT-S121,235 cells
l2.PT-S214,911 cells
l2.DTL112,292 cells
l2.FIB7,281 cells
l2.DCT6,570 cells
l2.M-FIB6,548 cells
l2.C-PC6,019 cells
l2.DTL25,103 cells
l2.VSMC/P4,998 cells
l2.C-TAL4,285 cells
l2.EC-AVR4,181 cells
l2.CNT2,613 cells
l2.PT-S32,575 cells
l2.PEC2,557 cells
l2.EC-DVR2,261 cells
l2.POD2,061 cells
l2.ncMON1,982 cells
l2.VSMC1,975 cells
l2.IMCD1,965 cells
l2.M-IC-A1,889 cells
l2.M-PC1,845 cells
l2.aPT1,685 cells
l2.C-IC-A1,671 cells
l2.DTL31,659 cells
l2.EC-PTC1,487 cells
l2.TAL1,464 cells
l2.EC-GC1,370 cells
l2.MYOF1,321 cells
l2.MAC-M21,212 cells
l2.cycMYOF1,104 cells
l2.MDC1,096 cells
l2.EC1,086 cells
l2.EC-AEA961 cells
l2.IMM941 cells
l2.TL915 cells
l2.NKT915 cells
l2.PT896 cells
l2.ATL887 cells
l2.T795 cells
l2.aTAL1674 cells
l2.cycEC633 cells
l2.VSM/P576 cells
l2.MD555 cells
l2.tPC-IC534 cells
l2.IC518 cells
l2.aFIB506 cells
l2.IC-B461 cells
l2.REN413 cells
l2.MC412 cells
l2.cycMNP385 cells
l2.MAST371 cells
l2.PC324 cells
l2.cycDCT317 cells
l2.cycCNT226 cells
l2.cDC205 cells
l2.PL169 cells
l2.cycPT166 cells
l2.EC-LYM148 cells
l2.pDC115 cells
GSM6128259_Puck_210412_0325,988 cells
GSM6128260_Puck_210412_0425,093 cells
GSM6128262_Puck_210412_0824,858 cells
GSM6128257_Puck_210412_0122,660 cells
GSM6128258_Puck_210412_0221,687 cells
GSM6128261_Puck_210412_0720,080 cells
GSM6128263_Puck_210412_0918,280 cells
GSM6128264_Puck_210412_1017,357 cells
GSM6128266_Puck_210412_1316,894 cells
GSM6128267_Puck_210412_1616,799 cells
GSM6128265_Puck_210412_1113,179 cells
Cluster 1033,024 cells
Cluster 821,776 cells
Cluster 619,478 cells
Cluster 1816,288 cells
Cluster 315,443 cells
Cluster 115,151 cells
Cluster 1513,877 cells
Cluster 913,819 cells
Cluster 1411,049 cells
Cluster 1210,084 cells
Cluster 48,035 cells
Cluster 57,658 cells
Cluster 27,591 cells
Cluster 114,646 cells
Cluster 73,756 cells
Cluster 283,029 cells
Cluster 132,823 cells
Cluster 161,953 cells
Cluster 271,947 cells
Cluster 191,946 cells
Cluster 211,559 cells
Cluster 291,488 cells
Cluster 171,429 cells
Cluster 301,379 cells
Cluster 20917 cells
Cluster 26790 cells
Cluster 24751 cells
Cluster 22403 cells
Cluster 25307 cells
Cluster 31240 cells
Cluster 23239 cells
Puck_210412_0325,988 cells
Puck_210412_0425,093 cells
Puck_210412_0824,858 cells
Puck_210412_0122,660 cells
Puck_210412_0221,687 cells
Puck_210412_0720,080 cells
Puck_210412_0918,280 cells
Puck_210412_1017,357 cells
Puck_210412_1316,894 cells
Puck_210412_1616,799 cells
Puck_210412_1113,179 cells
SLIDE-Seq2222,875 cells
Normal reference222,875 cells
21-019222,875 cells
Medulla140,366 cells
Cortex82,509 cells
Outer Medulla140,366 cells
Unassigned82,509 cells
M222,875 cells
Nephrectomy222,875 cells
KPMP222,875 cells
GSE183279222,875 cells
GRCh38222,875 cells
adult222,875 cells
kidney222,875 cells
6. Patient 21-020 [Slide-seq2]
ExploreCell type
Cell type (level 2)
Sample ID
Leiden clustering
Specimen ID
Assay
Subject ID
Tissue annotation level 1
Tissue annotation level 2
Sex
Tissue type
Sample source
GEO accession
Reference genome
Age group
Tissue
Disease
l1.PT57,702 cells
l1.FIB30,688 cells
l1.TAL27,275 cells
l1.IMM24,348 cells
l1.EC23,963 cells
l1.PC18,076 cells
l1.TL15,052 cells
l1.VSM/P11,174 cells
l1.POD5,719 cells
l1.IC4,686 cells
l1.DCT3,858 cells
l1.CNT2,848 cells
l1.PEC2,275 cells
Unassigned40,597 cells
l2.PT-S125,876 cells
l2.M-TAL16,588 cells
l2.PT-S216,310 cells
l2.M-FIB14,116 cells
l2.C-PC7,904 cells
l2.EC-AVR7,091 cells
l2.PT-S37,008 cells
l2.FIB6,679 cells
l2.DTL16,075 cells
l2.C-TAL5,403 cells
l2.POD5,099 cells
l2.VSMC/P4,182 cells
l2.EC-GC3,744 cells
l2.T3,622 cells
l2.ncMON3,177 cells
l2.PL3,101 cells
l2.M-PC3,087 cells
l2.IMCD2,982 cells
l2.DCT2,953 cells
l2.DTL32,131 cells
l2.EC-DVR2,130 cells
l2.VSMC2,098 cells
l2.CNT1,989 cells
l2.NKT1,899 cells
l2.EC-PTC1,752 cells
l2.IMM1,733 cells
l2.DTL21,699 cells
l2.MDC1,659 cells
l2.EC1,534 cells
l2.PEC1,527 cells
l2.MAC-M21,496 cells
l2.MYOF1,432 cells
l2.PT1,406 cells
l2.aPT1,385 cells
l2.EC-AEA1,310 cells
l2.M-IC-A1,287 cells
l2.cycMYOF1,286 cells
l2.ATL996 cells
l2.TAL919 cells
l2.IC-B748 cells
l2.TL745 cells
l2.cDC723 cells
l2.C-IC-A689 cells
l2.MC683 cells
l2.aFIB665 cells
l2.VSM/P664 cells
l2.cycEC640 cells
l2.MD610 cells
l2.PC550 cells
l2.tPC-IC530 cells
l2.IC482 cells
l2.cycMNP478 cells
l2.aTAL1444 cells
l2.REN429 cells
l2.MAST329 cells
l2.EC-LYM235 cells
l2.pDC217 cells
l2.cycCNT200 cells
l2.cycDCT198 cells
l2.cycPT143 cells
GSM6128278_Puck_210412_2928,181 cells
GSM6128277_Puck_210412_2725,382 cells
GSM6128275_Puck_210412_2420,015 cells
GSM6128274_Puck_210412_2319,067 cells
GSM6128279_Puck_210412_3118,849 cells
GSM6128268_Puck_210412_1718,620 cells
GSM6128271_Puck_210412_2018,077 cells
GSM6128272_Puck_210412_2117,765 cells
GSM6128276_Puck_210412_2617,197 cells
GSM6128269_Puck_210412_1816,593 cells
GSM6128270_Puck_210412_1916,440 cells
GSM6128273_Puck_210412_2211,478 cells
Cluster 1630,138 cells
Cluster 1020,450 cells
Cluster 1414,974 cells
Cluster 713,009 cells
Cluster 1210,796 cells
Cluster 210,635 cells
Cluster 1510,464 cells
Cluster 510,395 cells
Cluster 910,106 cells
Cluster 38,499 cells
Cluster 48,027 cells
Cluster 17,884 cells
Cluster 137,579 cells
Cluster 357,318 cells
Cluster 195,369 cells
Cluster 175,170 cells
Cluster 273,989 cells
Cluster 113,957 cells
Cluster 183,876 cells
Cluster 293,568 cells
Cluster 83,497 cells
Cluster 223,317 cells
Cluster 303,003 cells
Cluster 212,787 cells
Cluster 412,672 cells
Cluster 61,666 cells
Cluster 311,596 cells
Cluster 201,414 cells
Cluster 231,346 cells
Cluster 391,340 cells
Cluster 251,255 cells
Cluster 241,154 cells
Cluster 361,148 cells
Cluster 28955 cells
Cluster 26920 cells
Cluster 42529 cells
Cluster 34510 cells
Cluster 44383 cells
Cluster 37368 cells
Cluster 32354 cells
Cluster 38342 cells
Cluster 43255 cells
Cluster 45242 cells
Cluster 40233 cells
Cluster 33175 cells
Puck_210412_2928,181 cells
Puck_210412_2725,382 cells
Puck_210412_2420,015 cells
Puck_210412_2319,067 cells
Puck_210412_3118,849 cells
Puck_210412_1718,620 cells
Puck_210412_2018,077 cells
Puck_210412_2117,765 cells
Puck_210412_2617,197 cells
Puck_210412_1816,593 cells
Puck_210412_1916,440 cells
Puck_210412_2211,478 cells
SLIDE-Seq2227,664 cells
21-020227,664 cells
Cortex98,973 cells
Medulla86,112 cells
Cortex / Medulla25,382 cells
Cortex17,197 cells
Unassigned141,552 cells
Outer Medulla86,112 cells
M227,664 cells
Nephrectomy227,664 cells
KPMP227,664 cells
GSE183279227,664 cells
GRCh38227,664 cells
adult227,664 cells
kidney227,664 cells
Normal reference227,664 cells
7. Patient 3579 [Slide-seq2]
ExploreCell type
Cell type (level 2)
Sample ID
Leiden clustering
Specimen ID
Assay
Subject ID
Tissue annotation level 1
Tissue annotation level 2
Sex
Race
Tissue type
Sample source
Source ID
Reference genome
Age group
Tissue
Disease
l1.PT121,878 cells
l1.TAL28,673 cells
l1.EC17,999 cells
l1.IMM14,149 cells
l1.DCT13,788 cells
l1.FIB10,529 cells
l1.CNT8,512 cells
l1.POD7,174 cells
l1.VSM/P6,556 cells
l1.PC6,473 cells
l1.IC4,608 cells
l1.PEC4,043 cells
l1.TL1,731 cells
Unassigned58,543 cells
l2.PT-S133,133 cells
l2.PT-S328,745 cells
l2.PT-S224,073 cells
l2.C-TAL18,318 cells
l2.DCT10,759 cells
l2.aPT8,314 cells
l2.POD6,056 cells
l2.CNT5,251 cells
l2.FIB5,196 cells
l2.EC-GC3,683 cells
l2.C-PC3,175 cells
l2.EC-PTC3,114 cells
l2.M-TAL2,778 cells
l2.PEC2,513 cells
l2.PT2,447 cells
l2.VSMC2,353 cells
l2.EC-AVR2,090 cells
l2.EC1,915 cells
l2.IMM1,675 cells
l2.TAL1,594 cells
l2.ncMON1,329 cells
l2.MD1,178 cells
l2.IC-B1,115 cells
l2.C-IC-A1,073 cells
l2.NKT1,042 cells
l2.MAC-M2973 cells
l2.EC-AEA917 cells
l2.aTAL1893 cells
l2.cycPT770 cells
l2.M-FIB755 cells
l2.IMCD593 cells
l2.MYOF563 cells
l2.VSMC/P550 cells
l2.MAST542 cells
l2.M-PC529 cells
l2.cycCNT502 cells
l2.EC-DVR483 cells
l2.MC454 cells
l2.REN436 cells
l2.T423 cells
l2.MDC421 cells
l2.cycMYOF379 cells
l2.cycEC377 cells
l2.IC370 cells
l2.aFIB352 cells
l2.VSM/P349 cells
l2.TL348 cells
l2.cycDCT346 cells
l2.PC334 cells
l2.DTL1269 cells
l2.EC-LYM258 cells
l2.PL244 cells
l2.M-IC-A233 cells
l2.cycMNP211 cells
l2.DTL2148 cells
l2.cDC142 cells
l2.tPC-IC139 cells
l2.ATL137 cells
l2.pDC119 cells
l2.DTL392 cells
GSM5554452_Puck_200903_0630,275 cells
GSM5554456_Puck_200906_1027,322 cells
GSM5554451_Puck_200903_0525,465 cells
GSM5554454_Puck_200903_2525,459 cells
GSM5554457_Puck_200906_1825,366 cells
GSM5554453_Puck_200903_0724,701 cells
GSM5554450_Puck_200903_0324,065 cells
GSM5554455_Puck_200903_2622,410 cells
GSM5554448_Puck_200903_0120,828 cells
GSM5554449_Puck_200903_0220,222 cells
Cluster 1340,865 cells
Cluster 927,289 cells
Cluster 1523,262 cells
Cluster 123,038 cells
Cluster 1421,781 cells
Cluster 1113,531 cells
Cluster 1612,786 cells
Cluster 1212,512 cells
Cluster 611,710 cells
Cluster 79,743 cells
Cluster 109,685 cells
Cluster 48,733 cells
Cluster 27,155 cells
Cluster 176,337 cells
Cluster 56,285 cells
Cluster 35,630 cells
Cluster 85,048 cells
Cluster 18723 cells
Puck_200903_0630,275 cells
Puck_200906_1027,322 cells
Puck_200903_0525,465 cells
Puck_200903_2525,459 cells
Puck_200906_1825,366 cells
Puck_200903_0724,701 cells
Puck_200903_0324,065 cells
Puck_200903_2622,410 cells
Puck_200903_0120,828 cells
Puck_200903_0220,222 cells
SLIDE-Seq2246,113 cells
Patient 3579246,113 cells
Cortex246,113 cells
Unassigned246,113 cells
M246,113 cells
W246,113 cells
Nephrectomy246,113 cells
HuBMAP246,113 cells
HBM336.GKJN.63930,275 cells
HBM537.VLPL.73427,322 cells
HBM364.JRNL.42225,465 cells
HBM427.RVVD.27625,459 cells
HBM786.LZQZ.24225,366 cells
HBM247.GGHT.65824,701 cells
HBM488.GXLS.68924,065 cells
HBM464.KHSK.92722,410 cells
HBM346.CSWK.38820,828 cells
HBM956.NKKJ.64620,222 cells
GRCh38246,113 cells
adult246,113 cells
kidney246,113 cells
Normal reference246,113 cells
8. Patient 3593 [Slide-seq2]
ExploreCell type
Cell type (level 2)
Sample ID
Leiden clustering
Specimen ID
Assay
Subject ID
Tissue annotation level 1
Tissue annotation level 2
Sex
Race
Donor living at sample collection
Sample source
Source ID
Reference genome
Age group
Tissue
Disease
l1.TL71,411 cells
l1.TAL68,201 cells
l1.PC41,929 cells
l1.EC39,912 cells
l1.FIB26,427 cells
l1.PT11,134 cells
l1.IC5,932 cells
l1.IMM5,120 cells
l1.VSM/P4,402 cells
l1.PEC2,212 cells
l1.CNT1,603 cells
l1.DCT1,580 cells
l1.POD380 cells
Unassigned58,513 cells
l2.M-TAL49,971 cells
l2.ATL30,363 cells
l2.IMCD23,595 cells
l2.M-FIB17,292 cells
l2.DTL315,418 cells
l2.EC-AVR11,870 cells
l2.EC-DVR9,754 cells
l2.M-PC7,953 cells
l2.C-TAL7,203 cells
l2.DTL16,069 cells
l2.DTL24,092 cells
l2.EC-AEA3,565 cells
l2.M-IC-A2,528 cells
l2.PT-S32,524 cells
l2.TAL2,382 cells
l2.PT-S22,299 cells
l2.FIB2,055 cells
l2.aPT1,863 cells
l2.VSMC/P1,787 cells
l2.TL1,728 cells
l2.PEC1,418 cells
l2.EC1,217 cells
l2.PT-S11,002 cells
l2.C-PC989 cells
l2.PC958 cells
l2.DCT878 cells
l2.CNT797 cells
l2.EC-PTC715 cells
l2.EC-GC691 cells
l2.aTAL1639 cells
l2.cycEC478 cells
l2.aFIB477 cells
l2.IC465 cells
l2.MAC-M2460 cells
l2.VSMC444 cells
l2.tPC-IC441 cells
l2.C-IC-A440 cells
l2.ncMON434 cells
l2.NKT400 cells
l2.cycMYOF388 cells
l2.IC-B361 cells
l2.MYOF331 cells
l2.MD316 cells
l2.IMM308 cells
l2.PT268 cells
l2.VSM/P253 cells
l2.MDC235 cells
l2.POD223 cells
l2.cycCNT203 cells
l2.cycDCT187 cells
l2.MC175 cells
l2.T159 cells
l2.EC-LYM123 cells
l2.cycMNP99 cells
l2.MAST93 cells
l2.cDC74 cells
l2.cycPT73 cells
l2.pDC71 cells
l2.PL70 cells
l2.REN66 cells
GSM6128228_Puck_210113_2631,645 cells
GSM6128223_Puck_210113_2130,113 cells
GSM6128225_Puck_210113_2327,437 cells
GSM6128230_Puck_210113_2826,936 cells
GSM6128243_Puck_210119_0926,072 cells
GSM6128226_Puck_210113_2425,903 cells
GSM6128231_Puck_210113_2925,552 cells
GSM6128229_Puck_210113_2724,802 cells
GSM6128224_Puck_210113_2222,247 cells
GSM6128232_Puck_210113_3021,369 cells
GSM6128227_Puck_210113_2518,167 cells
Cluster 1250,829 cells
Cluster 645,066 cells
Cluster 536,470 cells
Cluster 330,670 cells
Cluster 128,118 cells
Cluster 824,845 cells
Cluster 1312,660 cells
Cluster 711,973 cells
Cluster 108,841 cells
Cluster 98,738 cells
Cluster 48,186 cells
Cluster 117,943 cells
Cluster 25,904 cells
Puck_210113_2631,645 cells
Puck_210113_2130,113 cells
Puck_210113_2327,437 cells
Puck_210113_2826,936 cells
Puck_210119_0926,072 cells
Puck_210113_2425,903 cells
Puck_210113_2925,552 cells
Puck_210113_2724,802 cells
Puck_210113_2222,247 cells
Puck_210113_3021,369 cells
Puck_210113_2518,167 cells
SLIDE-Seq2280,243 cells
Patient 3593280,243 cells
Medulla254,171 cells
Cortex26,072 cells
Outer Medulla136,244 cells
Inner Medulla117,927 cells
Unassigned26,072 cells
M280,243 cells
W280,243 cells
Deceased Donor280,243 cells
HuBMAP280,243 cells
HBM499.GPFC.89431,645 cells
HBM472.ZSRG.58630,113 cells
HBM876.NMKV.39227,437 cells
HBM684.XVPK.33626,936 cells
HBM387.KXLD.86726,072 cells
HBM246.PZPG.57325,903 cells
HBM543.DWSW.97825,552 cells
HBM832.WWZH.57524,802 cells
HBM969.VBPS.23922,247 cells
HBM337.GJHZ.66521,369 cells
HBM757.CMSL.89718,167 cells
GRCh38280,243 cells
adult280,243 cells
kidney280,243 cells
Normal reference280,243 cells
9. Patient 3611 [Slide-seq2]
ExploreCell type
Cell type (level 2)
Sample ID
Leiden clustering
Specimen ID
Assay
Subject ID
Tissue annotation level 1
Tissue annotation level 2
Sex
Race
Tissue type
Sample source
Source ID
Reference genome
Age group
Tissue
Disease
l1.TAL87,046 cells
l1.EC51,340 cells
l1.TL45,631 cells
l1.PC43,437 cells
l1.FIB40,861 cells
l1.IC13,245 cells
l1.VSM/P11,967 cells
l1.IMM8,091 cells
l1.PT6,652 cells
l1.PEC3,216 cells
l1.DCT2,742 cells
l1.CNT2,526 cells
l1.POD832 cells
l2.M-TAL69,378 cells
Unassigned64,904 cells
l2.M-FIB27,300 cells
l2.EC-AVR13,397 cells
l2.EC-DVR12,911 cells
l2.M-PC11,497 cells
l2.C-PC11,420 cells
l2.DTL111,274 cells
l2.IMCD9,729 cells
l2.ATL9,680 cells
l2.DTL37,509 cells
l2.M-IC-A6,657 cells
l2.VSMC/P6,331 cells
l2.EC-AEA4,714 cells
l2.C-TAL4,667 cells
l2.DTL24,580 cells
l2.FIB4,249 cells
l2.TAL2,418 cells
l2.EC2,301 cells
l2.IC2,112 cells
l2.PEC1,994 cells
l2.PT-S21,945 cells
l2.EC-PTC1,931 cells
l2.EC-GC1,639 cells
l2.PT-S11,580 cells
l2.DCT1,571 cells
l2.TL1,541 cells
l2.VSMC1,244 cells
l2.CNT1,223 cells
l2.MAC-M21,148 cells
l2.tPC-IC1,120 cells
l2.C-IC-A1,112 cells
l2.cycEC1,107 cells
l2.cycMYOF817 cells
l2.MDC790 cells
l2.aFIB767 cells
l2.PC765 cells
l2.PT-S3724 cells
l2.VSM/P705 cells
l2.IMM630 cells
l2.POD610 cells
l2.MYOF553 cells
l2.ncMON528 cells
l2.MC498 cells
l2.T442 cells
l2.NKT392 cells
l2.aTAL1377 cells
l2.IC-B372 cells
l2.aPT370 cells
l2.MD329 cells
l2.cycCNT295 cells
l2.cycDCT269 cells
l2.EC-LYM232 cells
l2.PL212 cells
l2.cycMNP189 cells
l2.cDC155 cells
l2.PT119 cells
l2.REN98 cells
l2.MAST92 cells
l2.pDC50 cells
l2.cycPT23 cells
GSM6128236_Puck_210113_3437,110 cells
GSM6128241_Puck_210113_3934,758 cells
GSM6128233_Puck_210113_3134,723 cells
GSM6128239_Puck_210113_3734,440 cells
GSM6128235_Puck_210113_3331,966 cells
GSM6128237_Puck_210113_3531,610 cells
GSM6128234_Puck_210113_3231,421 cells
GSM6128240_Puck_210113_3826,541 cells
GSM6128238_Puck_210113_3622,589 cells
GSM6128242_Puck_210113_4014,188 cells
GSM6128244_Puck_210119_1810,549 cells
GSM6128245_Puck_210119_207,691 cells
Cluster 1057,836 cells
Cluster 355,300 cells
Cluster 145,203 cells
Cluster 229,659 cells
Cluster 719,945 cells
Cluster 817,200 cells
Cluster 915,872 cells
Cluster 414,244 cells
Cluster 613,522 cells
Cluster 512,916 cells
Cluster 1412,194 cells
Cluster 129,965 cells
Cluster 137,905 cells
Cluster 114,057 cells
Cluster 151,116 cells
Cluster 16652 cells
Puck_210113_3437,110 cells
Puck_210113_3934,758 cells
Puck_210113_3134,723 cells
Puck_210113_3734,440 cells
Puck_210113_3331,966 cells
Puck_210113_3531,610 cells
Puck_210113_3231,421 cells
Puck_210113_3826,541 cells
Puck_210113_3622,589 cells
Puck_210113_4014,188 cells
Puck_210119_1810,549 cells
Puck_210119_207,691 cells
SLIDE-Seq2317,586 cells
Patient 3611317,586 cells
Medulla299,346 cells
Cortex18,240 cells
Outer Medulla299,346 cells
Unassigned18,240 cells
F317,586 cells
W317,586 cells
Nephrectomy317,586 cells
HuBMAP317,586 cells
HBM348.FXGT.72837,110 cells
HBM492.QPNN.57934,758 cells
HBM797.HSMJ.59634,723 cells
HBM272.KQDJ.87334,440 cells
HBM754.SJMP.48631,966 cells
HBM778.VKRZ.93431,610 cells
HBM699.CHMK.45731,421 cells
HBM489.LPCX.97826,541 cells
HBM586.QXWD.49222,589 cells
HBM258.RBCM.39314,188 cells
HBM838.LDFP.57810,549 cells
HBM973.XRLR.3657,691 cells
GRCh38317,586 cells
adult317,586 cells
kidney317,586 cells
Normal reference317,586 cells
10. Spatial localization with Spatial Transcriptomics for an atlas of healthy and injured cell states and niches in the human kidney [Visium ST]
ExploreSample ID
Specimen ID
Assay
Disease
Disease (level 1)
Disease (level 2)
Subject ID
Tissue annotation
Sex
Race
Tissue type
Sample source
Source ID
Tissue
Reference genome
Sample preservation method
Leiden clustering
eGFR
Age group
Age
BMI
V19S25-019_XY03-M614,166 cells
V19S25-019_XY04-F523,627 cells
V19S25-019_XY02-M322,627 cells
V19S25-017_XY03-134371,322 cells
V10S15-102_XY02_IU-21-019-51,034 cells
V10S15-102_XY03_IU-21-015-2956 cells
V10S14-086_XY03_21-0063904 cells
V10S14-086_XY01_21-0055787 cells
V10S14-085_XY03_21-0056673 cells
V10S21-388_XY04_20-0073673 cells
V10S21-388_XY03_20-0072673 cells
V10S14-085_XY02_20-0040645 cells
V10S14-086_XY04_21-0066640 cells
V10S14-086_XY02_20-0039601 cells
V10S21-388_XY01_21-0068560 cells
V10S14-087_XY03_21-0064534 cells
V10S14-087_XY04_21-0065507 cells
V10S14-087_XY02_21-0063461 cells
V10S14-087_XY01_21-0061453 cells
V10S14-085_XY04_21-0057407 cells
V10S21-388_XY02_20-0071370 cells
V10S14-085_XY01_20-0038317 cells
19-M614,166 cells
19-F523,627 cells
19-M322,627 cells
20-134371,322 cells
IU-21-019-51,034 cells
IU-21-015-2956 cells
21-0063/Medulla904 cells
21-0055787 cells
21-0073673 cells
21-0056673 cells
21-0072673 cells
20-0040645 cells
21-0066640 cells
20-0039601 cells
21-0068560 cells
21-0064534 cells
21-0065507 cells
21-0063/Cortex461 cells
21-0061453 cells
21-0057407 cells
21-0071370 cells
20-0038317 cells
Visium22,937 cells
Reference12,410 cells
Diabetic Kidney Disease (DKD)6,053 cells
Acute Kidney Injury (AKI)3,152 cells
Chronic Kidney Injury (CKD)1,322 cells
Ref12,410 cells
CKD7,375 cells
AKI3,152 cells
Ref12,410 cells
DKD6,053 cells
AKI3,152 cells
CKD1,322 cells
IU-M614,166 cells
IU-F523,627 cells
IU-M322,627 cells
28-122651,365 cells
IU-134371,322 cells
21-0191,034 cells
21-015956 cells
29-10282787 cells
29-10013673 cells
33-10331673 cells
29-10012673 cells
30-10125645 cells
30-10631640 cells
31-10042601 cells
29-10280560 cells
31-10221534 cells
30-10929507 cells
29-10404453 cells
27-10066407 cells
32-10003370 cells
32-10074317 cells
Cortex19,770 cells
Cortex / Medulla2,263 cells
Medulla904 cells
M12,640 cells
F10,297 cells
W14,226 cells
AA6,120 cells
Not Recorded1,990 cells
W, Other601 cells
Nephrectomy12,410 cells
Biopsy10,527 cells
BBCI11,742 cells
KPMP11,195 cells
IU-M614,166 cells
IU-F523,627 cells
IU-M322,627 cells
28-122651,365 cells
IU-134371,322 cells
21-0191,034 cells
21-015956 cells
29-10282787 cells
29-10013673 cells
33-10331673 cells
29-10012673 cells
30-10125645 cells
30-10631640 cells
31-10042601 cells
29-10280560 cells
31-10221534 cells
30-10929507 cells
29-10404453 cells
27-10066407 cells
32-10003370 cells
32-10074317 cells
kidney22,937 cells
Hg3822,937 cells
OCT at -80C22,937 cells
Cluster 26,252 cells
Cluster 44,675 cells
Cluster 14,474 cells
Cluster 33,261 cells
Cluster 52,806 cells
Cluster 61,469 cells
Unassigned19,658 cells
>602,005 cells
40-49673 cells
20-29601 cells
Adult19,658 cells
50-591,318 cells
60-691,274 cells
30-39370 cells
70-79317 cells
Unassigned19,658 cells
50-591,318 cells
60-691,274 cells
30-39370 cells
70-79317 cells
Unassigned22,937 cells
11. An atlas of healthy and injured cell states and niches in the human kidney [SNARE-Seq2]
ExploreLibrary ID
Doublet detection
Sample ID
Experiment
Specimen ID
Disease
Subject ID
Tissue region (level 1)
Tissue region (level 2)
Tissue region (level 3)
Sex
Race
Tissue type
Assay
Sample source
Cell type (predicted class)
Cell type (predicted subclass l1)
Cell type
Cell type (subclass l3)
Cell type (subclass l2)
Cell type (subclass l1)
State (level 2)
State (level 1)
Cell type (class)
Structure
Tissue
Leiden clustering
Sample preservation method
Reference genome
Age group
KC512,928 cells
KC742,656 cells
KM942,610 cells
KC472,325 cells
KC482,267 cells
KC692,182 cells
KC492,180 cells
KC682,111 cells
KC702,090 cells
KC452,079 cells
KC462,059 cells
KC672,057 cells
KM902,027 cells
KM872,023 cells
KM881,999 cells
KM891,983 cells
KM911,980 cells
KM671,970 cells
KC731,949 cells
KC711,949 cells
KM631,925 cells
KM651,897 cells
KM551,884 cells
KM621,872 cells
KC721,852 cells
KM931,794 cells
KM921,741 cells
KM501,706 cells
KM531,654 cells
KM511,629 cells
KM661,591 cells
KC241,527 cells
KC231,471 cells
KC261,439 cells
KM541,406 cells
KM471,358 cells
KM451,312 cells
KM491,306 cells
KC221,262 cells
KM481,253 cells
KM441,182 cells
KC211,149 cells
KM381,149 cells
KM28974 cells
KM31959 cells
KM86948 cells
KM79864 cells
KM29855 cells
KM84753 cells
KM82737 cells
KM83720 cells
KM59715 cells
KM27704 cells
KM26702 cells
KM80699 cells
KM81659 cells
KM73658 cells
KM77636 cells
KM75632 cells
KM57630 cells
KM61630 cells
KC66626 cells
KM56611 cells
KM76608 cells
KM74600 cells
KM60560 cells
KC60538 cells
KC61535 cells
KC62511 cells
KC63508 cells
KC58504 cells
KC59482 cells
KC65479 cells
KC64452 cells
KC55430 cells
KM30430 cells
KC56422 cells
KC54407 cells
KC53373 cells
KC52367 cells
KM101365 cells
KM99290 cells
KM98274 cells
KM96243 cells
KM97241 cells
KM95235 cells
KM23185 cells
KM25185 cells
KM24164 cells
KM21151 cells
KM20128 cells
KC25112 cells
KM6483 cells
KM1964 cells
KM1762 cells
KM1855 cells
KC5051 cells
KM1547 cells
KM5846 cells
KM5230 cells
KM1428 cells
KM2220 cells
KC5716 cells
KM1009 cells
KM468 cells
KM857 cells
KM165 cells
KM784 cells
False94,052 cells
True10,757 cells
BUKMAP_20190822E_SNARE2-R9,338 cells
BUKMAP_20190822C_SNARE2-R8,309 cells
BUKMAP_20190529F_SNARE2-R6,960 cells
BUKMAP_20190822B_SNARE2-R6,419 cells
BUKMAP_20190529G_SNARE2-R4,624 cells
BUKMAP_20190822D_SNARE2-R3,192 cells
BUKMAP_20200211B_SNARE2-R_P192,928 cells
BUKMAP_20200211H_SNARE2-R_P82,656 cells
BUKMAP_20200211E_SNARE2-R_P82,610 cells
BUKMAP_20200211B_SNARE2-R_P152,325 cells
BUKMAP_20200211B_SNARE2-R_P162,267 cells
BUKMAP_20200211H_SNARE2-R_P32,182 cells
BUKMAP_20200211B_SNARE2-R_P172,180 cells
BUKMAP_20200211H_SNARE2-R_P22,111 cells
BUKMAP_20200211H_SNARE2-R_P42,090 cells
BUKMAP_20200211B_SNARE2-R_P132,079 cells
BUKMAP_20200211B_SNARE2-R_P142,059 cells
BUKMAP_20200211H_SNARE2-R_P12,057 cells
BUKMAP_20200211E_SNARE2-R_P42,027 cells
BUKMAP_20200211E_SNARE2-R_P12,023 cells
BUKMAP_20200211E_SNARE2-R_P21,999 cells
BUKMAP_20200211E_SNARE2-R_P31,983 cells
BUKMAP_20200211E_SNARE2-R_P51,980 cells
BUKMAP_20200211H_SNARE2-R_P71,949 cells
BUKMAP_20200211H_SNARE2-R_P51,949 cells
BUKMAP_20200211H_SNARE2-R_P61,852 cells
BUKMAP_20200211E_SNARE2-R_P71,794 cells
BUKMAP_20200211E_SNARE2-R_P61,741 cells
BUKMAP_20190822A_SNARE2-R1,149 cells
BUKMAP_20200211C_SNARE2-R_P19948 cells
BUKMAP_20200211A_SNARE2-R_P19864 cells
BUKMAP_20190529E_SNARE2-R833 cells
BUKMAP_20200211C_SNARE2-R_P17753 cells
BUKMAP_20200211C_SNARE2-R_P15737 cells
BUKMAP_20200211C_SNARE2-R_P16720 cells
BUKMAP_20200211C_SNARE2-R_P13699 cells
BUKMAP_20200211C_SNARE2-R_P14659 cells
BUKMAP_20200211A_SNARE2-R_P13658 cells
BUKMAP_20200211A_SNARE2-R_P17636 cells
BUKMAP_20200211A_SNARE2-R_P15632 cells
BUKMAP_20200211F_SNARE2-R_P8626 cells
BUKMAP_20200211A_SNARE2-R_P16608 cells
BUKMAP_20200211A_SNARE2-R_P14600 cells
BUKMAP_20200211F_SNARE2-R_P2538 cells
BUKMAP_20200211F_SNARE2-R_P3535 cells
BUKMAP_20200211F_SNARE2-R_P4511 cells
BUKMAP_20200211F_SNARE2-R_P5508 cells
BUKMAP_20200211D_SNARE2-R_P19504 cells
BUKMAP_20200211F_SNARE2-R_P1482 cells
BUKMAP_20200211F_SNARE2-R_P7479 cells
BUKMAP_20200211F_SNARE2-R_P6452 cells
BUKMAP_20200211D_SNARE2-R_P16430 cells
BUKMAP_20200211D_SNARE2-R_P17422 cells
BUKMAP_20200211D_SNARE2-R_P15407 cells
BUKMAP_20200211D_SNARE2-R_P14373 cells
BUKMAP_20200211D_SNARE2-R_P13367 cells
BUKMAP_20200211G_SNARE2-R_P19365 cells
BUKMAP_20200211G_SNARE2-R_P17290 cells
BUKMAP_20200211G_SNARE2-R_P16274 cells
BUKMAP_20190529D_SNARE2-R261 cells
BUKMAP_20200211G_SNARE2-R_P14243 cells
BUKMAP_20200211G_SNARE2-R_P15241 cells
BUKMAP_20200211G_SNARE2-R_P13235 cells
BUKMAP_20200211B_SNARE2-R_P1851 cells
BUKMAP_20200211D_SNARE2-R_P1816 cells
BUKMAP_20200211G_SNARE2-R_P189 cells
BUKMAP_20200211C_SNARE2-R_P187 cells
BUKMAP_20200211A_SNARE2-R_P184 cells
BUKMAP_20200211H16,846 cells
BUKMAP_20200211E16,157 cells
BUKMAP_20200211B13,889 cells
BUKMAP_20190822E9,338 cells
BUKMAP_20190822C8,309 cells
BUKMAP_20190529F6,960 cells
BUKMAP_20190822B6,419 cells
BUKMAP_20190529G4,624 cells
BUKMAP_20200211C4,523 cells
BUKMAP_20200211F4,131 cells
BUKMAP_20200211A4,002 cells
BUKMAP_20190822D3,192 cells
BUKMAP_20200211D2,519 cells
BUKMAP_20200211G1,657 cells
BUKMAP_20190822A1,149 cells
BUKMAP_20190529E833 cells
BUKMAP_20190529D261 cells
K1900069_116,846 cells
K1900028_216,157 cells
K1900021_313,889 cells
K1900019_113,340 cells
K1800430_39,225 cells
K1700416_78,309 cells
K1900025_16,960 cells
K1900026_14,624 cells
K1900175_14,523 cells
K1800429_34,131 cells
K1900070_13,192 cells
K1900174_12,519 cells
K1800404_7833 cells
K1800404_6261 cells
Normal Reference104,809 cells
S350527,741 cells
S350427,229 cells
S351020,038 cells
S349913,356 cells
S34098,309 cells
S35357,042 cells
S34941,094 cells
Medulla52,648 cells
Cortex52,161 cells
M52,648 cells
C52,161 cells
Medulla52,648 cells
Cortex44,345 cells
CBert7,816 cells
M54,821 cells
F49,988 cells
W93,225 cells
AA11,584 cells
Deceased Donor67,346 cells
Nephrectomy37,463 cells
SNARE-Seq2104,809 cells
query104,809 cells
epithelial cells91,578 cells
stroma cells6,252 cells
endothelial cells4,693 cells
immune cells2,273 cells
Unassigned13 cells
TAL32,228 cells
PT24,990 cells
PC10,340 cells
DTL7,504 cells
IC6,971 cells
FIB5,081 cells
EC4,741 cells
DCT3,001 cells
CNT2,862 cells
IMM2,329 cells
POD1,942 cells
VSM/P1,207 cells
ATL1,141 cells
PEC452 cells
NEU13 cells
PapE7 cells
Medullary Thick Ascending Limb Cell15,987 cells
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell9,083 cells
Proximal Tubule Epithelial Cell Segment 18,731 cells
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell7,546 cells
Degenerative Outer Medullary Collecting Duct Principal Cell5,579 cells
Cortical Thick Ascending Limb Cell4,811 cells
Descending Thin Limb Cell Type 14,697 cells
Medullary Fibroblast3,476 cells
Cortical Collecting Duct Intercalated Cell Type A3,295 cells
Degenerative Medullary Thick Ascending Limb Cell3,227 cells
Distal Convoluted Tubule Cell Type 12,711 cells
Descending Thin Limb Cell Type 22,709 cells
Cortical Collecting Duct Principal Cell2,664 cells
Proximal Tubule Epithelial Cell Segment 32,516 cells
Proximal Tubule Epithelial Cell Segment 22,360 cells
Connecting Tubule Cell2,174 cells
Podocyte2,012 cells
Outer Medullary Collecting Duct Intercalated Cell Type A1,822 cells
Ascending Vasa Recta Endothelial Cell1,660 cells
Fibroblast1,391 cells
Descending Vasa Recta Endothelial Cell1,349 cells
Ascending Thin Limb Cell1,269 cells
Peritubular Capilary Endothelial Cell1,230 cells
Outer Medullary Collecting Duct Principal Cell1,118 cells
Degenerative Proximal Tubule Epithelial Cell991 cells
Vascular Smooth Muscle Cell / Pericyte989 cells
M2 Macrophage781 cells
Transitional Principal-Intercalated Cell727 cells
Connecting Tubule Principal Cell663 cells
Degenerative Cortical Intercalated Cell Type A647 cells
T Cell629 cells
Degenerative Cortical Thick Ascending Limb Cell604 cells
Parietal Epithelial Cell478 cells
Macula Densa Cell472 cells
Intercalated Cell Type B470 cells
Monocyte-derived Cell390 cells
Glomerular Capillary Endothelial Cell375 cells
Cycling Proximal Tubule Epithelial Cell360 cells
Inner Medullary Collecting Duct Cell287 cells
Distal Convoluted Tubule Cell Type 2268 cells
B Cell265 cells
Connecting Tubule Intercalated Cell Type A227 cells
Degenerative Inner Medullary Collecting Duct Cell190 cells
Plasma Cell178 cells
Degenerative Peritubular Capilary Endothelial Cell170 cells
Myofibroblast169 cells
Adaptive / Maladaptive / Repairing Fibroblast165 cells
Vascular Smooth Muscle Cell146 cells
Degenerative Connecting Tubule Cell122 cells
Degenerative Fibroblast109 cells
Mast Cell102 cells
Lymphatic Endothelial Cell89 cells
Natural Killer T Cell79 cells
Non-Classical Monocyte77 cells
Mesangial Cell71 cells
Neutrophil60 cells
Renin-positive Juxtaglomerular Granular Cell24 cells
Afferent / Efferent Arteriole Endothelial Cell18 cells
M-TAL15,987 cells
aPT9,083 cells
PT-S18,731 cells
aTAL25,834 cells
dOMCD-PC5,579 cells
C-TAL4,811 cells
DTL14,697 cells
M-FIB3,476 cells
CCD-IC-A3,295 cells
dM-TAL3,227 cells
DCT12,711 cells
DTL22,709 cells
CCD-PC2,664 cells
PT-S32,516 cells
PT-S22,360 cells
CNT2,174 cells
POD2,012 cells
OMCD-IC-A1,822 cells
aTAL11,712 cells
EC-AVR1,660 cells
FIB1,391 cells
EC-DVR1,349 cells
ATL1,269 cells
EC-PTC1,230 cells
OMCD-PC1,118 cells
dPT991 cells
VSMC/P989 cells
MAC-M2781 cells
tPC-IC727 cells
CNT-PC663 cells
dC-IC-A647 cells
T629 cells
dC-TAL604 cells
PEC478 cells
MD472 cells
IC-B470 cells
MDC390 cells
EC-GC375 cells
cycPT360 cells
IMCD287 cells
DCT2268 cells
B265 cells
CNT-IC-A227 cells
dIMCD190 cells
PL178 cells
dEC-PTC170 cells
MYOF169 cells
aFIB165 cells
VSMC146 cells
dCNT122 cells
dFIB109 cells
MAST102 cells
EC-LYM89 cells
NKT79 cells
ncMON77 cells
MC71 cells
N60 cells
REN24 cells
EC-AEA18 cells
M-TAL15,987 cells
aPT9,083 cells
PT-S18,731 cells
aTAL25,834 cells
dM-PC5,579 cells
C-TAL4,811 cells
DTL14,697 cells
C-IC-A3,522 cells
M-FIB3,476 cells
dM-TAL3,227 cells
DCT2,979 cells
CNT2,837 cells
DTL22,709 cells
C-PC2,664 cells
PT-S32,516 cells
PT-S22,360 cells
POD2,012 cells
M-IC-A1,822 cells
aTAL11,712 cells
EC-AVR1,660 cells
FIB1,391 cells
EC-DVR1,349 cells
ATL1,269 cells
EC-PTC1,230 cells
M-PC1,118 cells
dPT991 cells
VSMC/P989 cells
MAC-M2781 cells
tPC-IC727 cells
dC-IC-A647 cells
T629 cells
dC-TAL604 cells
PEC478 cells
MD472 cells
IC-B470 cells
MDC390 cells
EC-GC375 cells
cycPT360 cells
IMCD287 cells
B265 cells
dIMCD190 cells
PL178 cells
dEC-PTC170 cells
MYOF169 cells
aFIB165 cells
VSMC146 cells
dCNT122 cells
dFIB109 cells
MAST102 cells
EC-LYM89 cells
NKT79 cells
ncMON77 cells
MC71 cells
N60 cells
REN24 cells
EC-AEA18 cells
TAL32,647 cells
PT24,041 cells
PC9,838 cells
DTL7,406 cells
IC7,188 cells
FIB5,312 cells
EC4,891 cells
DCT2,979 cells
CNT2,959 cells
IMM2,561 cells
POD2,012 cells
ATL1,269 cells
VSM/P1,228 cells
PEC478 cells
reference75,120 cells
adaptive - epi16,629 cells
degenerative11,639 cells
transitioning727 cells
cycling360 cells
adaptive - str334 cells
reference75,120 cells
altered29,689 cells
epithelial cells90,817 cells
stroma cells6,540 cells
endothelial cells4,891 cells
immune cells2,561 cells
distal tubules28,080 cells
proximal tubules24,041 cells
collecting tubules19,985 cells
intermediate tubules16,221 cells
interstitium9,026 cells
vessels4,516 cells
renal corpuscle2,940 cells
kidney104,809 cells
Cluster 134,584 cells
Cluster 218,028 cells
Cluster 716,258 cells
Cluster 512,043 cells
Cluster 86,999 cells
Cluster 66,664 cells
Cluster 45,332 cells
Cluster 32,942 cells
Cluster 91,959 cells
cryosectioned104,809 cells
GRCh38104,809 cells
adult104,809 cells
Alias names
GSE183279, GSE183273, GSE183274, GSE183276, GSE183277, GSE183456, GSE199711