Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

Cite

The Tabula Sapiens Consortium, Jones, R.C., Karkanias, J., Krasnow, M.A., Pisco, A.O., Quake, S.R., Salzman, J., Yosef, N., Bulthaup, B., Brown, P. and Harper, W., 2026. Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types, Cell, 0.

https://doi.org/10.1016/j.cell.2026.08.010

Abstract

The Tabula Sapiens is a reference human cell atlas containing single-cell transcriptomic data from more than two dozen organs and tissues. Here, we report Tabula Sapiens 2.0, which includes data from nine new donors, doubles the number of cells, and adds four new tissues. These new data include four donors with multiple organs contributed, thus providing a unique dataset in which genetic background, age, and epigenetic effects are controlled for. We illustrate applications of the Tabula Sapiens data in areas as diverse as gene regulation and aging. The Tabula Sapiens contains transcripts from nearly all human transcription factors, thereby providing putative cell-type specificity for nearly every human transcription factor and insights into their potential regulatory roles. We also analyze the transcriptomes of cells expressing canonical genes relating to cellular senescence, revealing the heterogeneity and context-dependent nature of senescence and providing new hypotheses into senescence-associated pathways.

Datasets

1. All Cells

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Subject ID
Tissue
Tissue (Anatomical position)
Notes
Sample ID
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10X run
Ambient removal
Cell type (compartment)
Cell type (broad cell class)
Cell type (free annotation)
Is manually annotated
Is published in 2022
SCVI batch
Ethnicity
Sample number
Cell type
Assay
Disease
Sex
Age
Age group
SCVI leiden clustering
Reference genome
Sample preservation method
TSP14213,530 cells
TSP25178,610 cells
TSP21158,024 cells
TSP2146,849 cells
TSP27137,422 cells
TSP761,205 cells
TSP146,507 cells
TSP426,122 cells
TSP1025,123 cells
TSP2821,791 cells
TSP3020,066 cells
TSP819,980 cells
TSP2613,537 cells
TSP612,606 cells
TSP1212,047 cells
TSP209,575 cells
TSP197,888 cells
TSP97,057 cells
TSP156,048 cells
TSP34,228 cells
TSP52,876 cells
TSP112,552 cells
TSP172,114 cells
TSP13461 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

2. Endothelium

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SCVI leiden clustering (compartment)
Age
Age group
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.07,402 cells
1.06,670 cells
2.06,206 cells
3.05,642 cells
4.05,296 cells
5.04,751 cells
6.04,598 cells
7.04,592 cells
8.04,023 cells
9.03,484 cells
10.03,412 cells
11.03,316 cells
12.03,056 cells
13.02,272 cells
14.01,770 cells
15.01,764 cells
16.01,620 cells
17.01,595 cells
18.01,260 cells
19.0247 cells
20.0219 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

3. Epithelium

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SCVI leiden clustering (compartment)
Age
Age group
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
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Ethnicity
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.023,106 cells
1.021,329 cells
2.013,167 cells
3.012,183 cells
4.012,035 cells
5.011,855 cells
6.011,649 cells
7.011,642 cells
8.011,576 cells
9.08,963 cells
10.08,345 cells
11.07,767 cells
12.06,309 cells
13.06,103 cells
14.04,767 cells
15.04,402 cells
16.04,315 cells
17.04,122 cells
18.04,061 cells
19.03,913 cells
20.03,290 cells
21.03,225 cells
22.03,043 cells
23.03,016 cells
24.02,871 cells
25.02,338 cells
26.02,197 cells
27.02,167 cells
28.01,867 cells
29.01,860 cells
30.01,769 cells
31.01,767 cells
32.01,679 cells
33.01,650 cells
34.01,645 cells
35.0821 cells
36.0576 cells
37.0459 cells
38.0183 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

4. Germline

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SCVI leiden clustering (compartment)
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.0451 cells
1.0342 cells
2.0325 cells
3.0310 cells
4.0275 cells
5.0257 cells
6.0227 cells
7.0208 cells
8.0205 cells
9.0191 cells
10.0161 cells
11.0160 cells
12.0159 cells
13.0157 cells
14.0156 cells
15.0154 cells
16.0149 cells
17.0147 cells
18.0145 cells
19.0144 cells
20.0139 cells
21.0138 cells
24.0131 cells
22.0131 cells
23.0131 cells
25.0125 cells
26.0123 cells
27.0119 cells
28.0112 cells
30.0108 cells
29.0108 cells
31.0105 cells
32.0105 cells
33.0102 cells
34.093 cells
35.092 cells
36.091 cells
37.091 cells
38.089 cells
39.088 cells
40.088 cells
41.086 cells
42.085 cells
43.075 cells
44.072 cells
45.072 cells
46.070 cells
47.067 cells
48.065 cells
49.052 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

5. Immune

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SCVI leiden clustering (compartment)
Age
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Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
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Is published in 2022
Notes
Reference genome
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SCVI batch
SCVI leiden clustering
Sample ID
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Subject ID
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Tissue (Anatomical position)
0.080,349 cells
1.051,210 cells
2.044,886 cells
3.043,649 cells
4.041,734 cells
5.030,657 cells
6.028,435 cells
7.028,357 cells
8.027,059 cells
9.025,731 cells
10.025,276 cells
11.024,236 cells
12.021,270 cells
13.017,844 cells
14.016,868 cells
15.014,193 cells
16.010,996 cells
17.010,321 cells
18.07,896 cells
19.07,644 cells
20.06,387 cells
21.05,670 cells
22.04,733 cells
23.04,068 cells
24.03,591 cells
25.02,439 cells
26.01,897 cells
27.01,789 cells
28.0871 cells
29.0813 cells
30.0555 cells
31.0475 cells
32.0412 cells
33.06 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

6. Neural

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SCVI leiden clustering (compartment)
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
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Is published in 2022
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Reference genome
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SCVI batch
SCVI leiden clustering
Sample ID
Sample number
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Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.0379 cells
1.0357 cells
2.0253 cells
3.0169 cells
4.0159 cells
5.0153 cells
6.0144 cells
7.0136 cells
8.0107 cells
9.0106 cells
10.093 cells
11.084 cells
12.080 cells
13.078 cells
14.077 cells
15.071 cells
16.069 cells
17.064 cells
18.063 cells
19.043 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

7. Stromal

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SCVI leiden clustering (compartment)
Age
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Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
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Is published in 2022
Notes
Reference genome
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SCVI batch
SCVI leiden clustering
Sample ID
Sample number
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Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.029,000 cells
1.022,085 cells
2.020,131 cells
3.015,335 cells
4.015,302 cells
5.014,866 cells
6.014,136 cells
7.013,690 cells
8.012,883 cells
9.010,673 cells
10.08,342 cells
11.07,727 cells
12.06,195 cells
13.05,747 cells
14.05,627 cells
15.05,089 cells
16.04,699 cells
17.04,478 cells
18.03,492 cells
19.03,032 cells
20.02,904 cells
21.02,272 cells
22.01,789 cells
23.01,624 cells
24.0730 cells
25.0553 cells
26.0157 cells
27.0126 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

8. Bladder

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SCVI leiden clustering (tissue)
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.06,653 cells
1.04,705 cells
2.04,634 cells
3.04,283 cells
4.03,920 cells
5.03,797 cells
6.03,475 cells
7.03,269 cells
8.03,163 cells
9.02,929 cells
10.02,910 cells
11.02,817 cells
12.02,673 cells
13.02,161 cells
14.02,146 cells
15.02,050 cells
16.01,948 cells
17.01,564 cells
18.01,248 cells
19.0945 cells
20.0734 cells
21.0674 cells
22.0610 cells
23.0607 cells
24.0561 cells
25.0529 cells
26.0520 cells
27.0512 cells
28.0235 cells
29.0113 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

9. Blood

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SCVI leiden clustering (tissue)
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
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Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
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Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.07,439 cells
1.05,570 cells
2.05,373 cells
3.05,268 cells
4.05,052 cells
5.04,633 cells
6.04,491 cells
7.04,170 cells
9.03,937 cells
8.03,936 cells
10.03,919 cells
11.03,408 cells
12.03,013 cells
13.02,727 cells
14.02,619 cells
15.02,333 cells
16.02,229 cells
17.02,141 cells
18.01,825 cells
19.01,684 cells
20.01,470 cells
21.01,374 cells
22.01,134 cells
23.0916 cells
24.0760 cells
25.0670 cells
26.0610 cells
27.0602 cells
28.0487 cells
29.0440 cells
30.0425 cells
31.0275 cells
32.0167 cells
33.0136 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

10. Bone_Marrow

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SCVI leiden clustering (tissue)
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
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Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.01,921 cells
1.01,685 cells
2.01,634 cells
3.01,510 cells
4.01,440 cells
5.01,339 cells
6.01,226 cells
7.01,207 cells
8.01,160 cells
9.01,153 cells
10.01,062 cells
11.01,058 cells
12.01,030 cells
13.0951 cells
14.0943 cells
15.0940 cells
16.0897 cells
17.0875 cells
18.0839 cells
19.0801 cells
20.0715 cells
21.0617 cells
22.0493 cells
23.0382 cells
24.0382 cells
25.0340 cells
26.0301 cells
27.0152 cells
28.059 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

11. Ear

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SCVI leiden clustering (tissue)
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.0599 cells
1.0594 cells
2.0391 cells
3.0292 cells
4.0257 cells
5.0236 cells
6.0173 cells
7.0143 cells
8.0141 cells
9.0132 cells
10.049 cells
11.048 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

12. Eye

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SCVI leiden clustering (tissue)
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.02,681 cells
1.01,888 cells
2.01,726 cells
3.01,676 cells
4.01,637 cells
5.01,591 cells
6.01,548 cells
7.01,401 cells
8.01,361 cells
9.01,311 cells
10.01,285 cells
12.01,221 cells
11.01,219 cells
14.01,156 cells
15.01,155 cells
13.01,154 cells
16.0997 cells
17.0845 cells
18.0812 cells
19.0804 cells
20.0803 cells
21.0775 cells
22.0764 cells
23.0763 cells
24.0683 cells
25.0600 cells
26.0570 cells
27.0522 cells
28.0514 cells
29.0453 cells
30.0209 cells
31.0149 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

13. Fat

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SCVI leiden clustering (tissue)
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Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
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Is published in 2022
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Reference genome
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SCVI batch
SCVI leiden clustering
Sample ID
Sample number
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Subject ID
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Tissue (Anatomical position)
0.012,159 cells
1.07,633 cells
2.06,854 cells
3.06,312 cells
4.05,985 cells
5.05,674 cells
6.05,383 cells
7.04,386 cells
8.04,235 cells
9.04,206 cells
10.03,808 cells
11.03,740 cells
12.03,290 cells
13.03,138 cells
14.02,917 cells
15.02,694 cells
16.02,250 cells
17.02,095 cells
18.01,198 cells
19.01,134 cells
20.0895 cells
21.0878 cells
22.0823 cells
23.0663 cells
24.0606 cells
25.0597 cells
26.0427 cells
27.0290 cells
28.0145 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

14. Heart

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SCVI leiden clustering (tissue)
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
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Cell type (free annotation)
Disease
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Is published in 2022
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Reference genome
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Sample ID
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Tissue (Anatomical position)
0.01,630 cells
1.01,608 cells
2.01,398 cells
3.01,371 cells
4.01,363 cells
5.01,338 cells
6.01,097 cells
7.01,082 cells
8.01,034 cells
9.01,031 cells
10.01,028 cells
11.0919 cells
12.0916 cells
13.0902 cells
14.0886 cells
15.0830 cells
16.0697 cells
17.0694 cells
18.0661 cells
19.0602 cells
20.0595 cells
21.0579 cells
22.0539 cells
23.0486 cells
24.0369 cells
25.0365 cells
26.0344 cells
27.0336 cells
28.0325 cells
29.0296 cells
30.0156 cells
31.0136 cells
32.0130 cells
33.089 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

15. Kidney

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SCVI leiden clustering (tissue)
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Is published in 2022
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Tissue (Anatomical position)
0.0614 cells
1.0586 cells
2.0571 cells
3.0552 cells
4.0536 cells
5.0531 cells
6.0520 cells
7.0506 cells
8.0499 cells
9.0490 cells
10.0482 cells
11.0477 cells
12.0426 cells
13.0419 cells
14.0417 cells
15.0401 cells
16.0391 cells
17.0362 cells
18.0353 cells
19.0345 cells
20.0315 cells
21.0302 cells
22.0279 cells
23.0276 cells
24.0273 cells
25.0194 cells
26.0145 cells
27.0114 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

16. Large_Intestine

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SCVI leiden clustering (tissue)
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0.02,173 cells
1.01,984 cells
2.01,948 cells
3.01,947 cells
4.01,877 cells
5.01,758 cells
6.01,749 cells
7.01,723 cells
8.01,660 cells
9.01,643 cells
10.01,484 cells
11.01,394 cells
12.01,311 cells
13.0849 cells
14.0807 cells
15.0804 cells
16.0799 cells
17.0762 cells
18.0720 cells
19.0707 cells
20.0619 cells
21.0383 cells
22.0368 cells
23.0336 cells
24.0189 cells
25.060 cells
26.030 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

17. Liver

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SCVI leiden clustering (tissue)
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Is published in 2022
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0.01,236 cells
1.01,226 cells
2.01,139 cells
3.01,083 cells
4.01,048 cells
5.0957 cells
6.0932 cells
7.0889 cells
8.0860 cells
9.0832 cells
10.0799 cells
11.0796 cells
12.0790 cells
13.0770 cells
14.0722 cells
15.0711 cells
16.0684 cells
17.0662 cells
18.0662 cells
19.0635 cells
20.0623 cells
21.0534 cells
22.0497 cells
23.0469 cells
24.0448 cells
25.0395 cells
26.0354 cells
27.0342 cells
28.0314 cells
29.0256 cells
30.0254 cells
31.0230 cells
32.065 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

18. Lung

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SCVI leiden clustering (tissue)
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0.05,046 cells
1.04,660 cells
2.04,628 cells
3.04,417 cells
4.03,394 cells
5.03,366 cells
6.03,133 cells
7.03,114 cells
8.02,775 cells
9.02,749 cells
10.02,626 cells
11.02,427 cells
12.02,307 cells
13.02,239 cells
14.02,075 cells
15.01,969 cells
16.01,629 cells
17.01,486 cells
18.01,336 cells
19.01,292 cells
20.01,254 cells
21.01,110 cells
22.0999 cells
23.0958 cells
24.0917 cells
25.0783 cells
26.0776 cells
27.0678 cells
28.0452 cells
29.0356 cells
30.0329 cells
31.0324 cells
32.0145 cells
33.098 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

19. Lymph_Node

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SCVI leiden clustering (tissue)
10X run
Age
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Is published in 2022
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0.011,269 cells
1.010,907 cells
2.09,436 cells
3.08,377 cells
4.07,621 cells
5.07,038 cells
6.06,674 cells
7.06,451 cells
8.06,114 cells
9.06,097 cells
10.06,029 cells
11.05,938 cells
12.05,883 cells
13.05,319 cells
14.05,142 cells
15.03,845 cells
16.03,795 cells
17.03,227 cells
18.02,818 cells
19.02,584 cells
20.02,209 cells
21.0660 cells
22.0599 cells
23.0515 cells
24.0304 cells
25.0211 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

20. Mammary

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SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
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Is manually annotated
Is published in 2022
Notes
Reference genome
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Sample ID
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Tissue (Anatomical position)
0.02,087 cells
1.01,897 cells
2.01,847 cells
3.01,842 cells
4.01,692 cells
5.01,685 cells
6.01,642 cells
7.01,573 cells
8.01,569 cells
9.01,510 cells
10.01,458 cells
11.01,424 cells
12.01,378 cells
13.01,326 cells
14.01,104 cells
15.01,071 cells
16.01,032 cells
17.01,006 cells
18.0743 cells
19.0691 cells
20.0661 cells
21.0587 cells
22.0348 cells
23.0283 cells
25.0165 cells
24.0165 cells
26.0100 cells
27.050 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

21. Muscle

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SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
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Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.04,916 cells
1.04,114 cells
2.03,944 cells
3.03,365 cells
4.03,357 cells
5.02,709 cells
6.02,489 cells
7.02,481 cells
8.02,412 cells
9.02,298 cells
10.02,163 cells
11.02,008 cells
12.01,917 cells
13.01,904 cells
14.01,829 cells
15.01,504 cells
16.01,062 cells
17.0860 cells
18.0514 cells
19.0294 cells
20.0181 cells
21.0173 cells
22.0154 cells
23.0124 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

22. Ovary

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.03,288 cells
1.03,255 cells
2.03,047 cells
3.03,033 cells
4.02,978 cells
5.02,719 cells
6.02,576 cells
7.02,471 cells
8.02,180 cells
9.02,160 cells
10.02,070 cells
11.01,933 cells
12.01,878 cells
13.01,859 cells
14.01,839 cells
15.01,787 cells
16.01,733 cells
17.01,682 cells
18.01,337 cells
19.01,301 cells
20.01,155 cells
21.0920 cells
22.0545 cells
23.0497 cells
24.0493 cells
25.0215 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

23. Pancreas

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.0397 cells
1.0368 cells
2.0357 cells
3.0346 cells
4.0330 cells
5.0322 cells
6.0318 cells
7.0316 cells
8.0313 cells
9.0302 cells
10.0297 cells
11.0290 cells
12.0287 cells
13.0274 cells
14.0264 cells
15.0259 cells
16.0258 cells
17.0253 cells
18.0248 cells
19.0246 cells
20.0246 cells
21.0245 cells
22.0242 cells
23.0235 cells
24.0232 cells
25.0231 cells
26.0229 cells
27.0221 cells
28.0215 cells
29.0209 cells
30.0204 cells
31.0203 cells
32.0201 cells
34.0198 cells
33.0198 cells
35.0191 cells
36.0190 cells
38.0187 cells
37.0187 cells
39.0186 cells
40.0185 cells
41.0182 cells
42.0173 cells
44.0170 cells
43.0170 cells
45.0167 cells
46.0164 cells
47.0159 cells
49.0156 cells
48.0156 cells
50.0152 cells
52.0149 cells
51.0149 cells
53.0145 cells
54.0143 cells
55.0141 cells
56.0139 cells
57.0137 cells
58.0125 cells
59.0122 cells
60.0118 cells
61.0116 cells
62.0110 cells
63.0110 cells
64.0108 cells
65.0103 cells
66.096 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

24. Prostate

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.0999 cells
1.0827 cells
2.0808 cells
3.0805 cells
4.0795 cells
5.0779 cells
6.0767 cells
7.0720 cells
8.0709 cells
9.0707 cells
10.0703 cells
11.0697 cells
12.0667 cells
13.0647 cells
14.0612 cells
15.0596 cells
16.0534 cells
17.0527 cells
18.0520 cells
19.0511 cells
20.0503 cells
21.0501 cells
22.0495 cells
23.0487 cells
24.0457 cells
25.0431 cells
26.0412 cells
27.0380 cells
28.0364 cells
29.0332 cells
30.0332 cells
31.0293 cells
32.0286 cells
33.0263 cells
34.0255 cells
35.0244 cells
36.0217 cells
37.0211 cells
38.0158 cells
39.0141 cells
40.0134 cells
41.0111 cells
42.093 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

25. Salivary_Gland

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.03,028 cells
1.02,619 cells
2.02,490 cells
3.02,081 cells
4.01,900 cells
5.01,881 cells
6.01,669 cells
7.01,611 cells
8.01,552 cells
9.01,541 cells
10.01,540 cells
11.01,351 cells
12.01,305 cells
13.01,217 cells
14.01,199 cells
15.0997 cells
16.0986 cells
17.0937 cells
18.0924 cells
19.0917 cells
20.0907 cells
21.0888 cells
22.0856 cells
23.0834 cells
24.0815 cells
25.0569 cells
26.0548 cells
27.0496 cells
28.0424 cells
29.0352 cells
30.0346 cells
31.0342 cells
32.0290 cells
33.0251 cells
34.0158 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

26. Skin

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.01,021 cells
1.0962 cells
2.0914 cells
3.0859 cells
4.0809 cells
5.0772 cells
6.0728 cells
7.0727 cells
8.0712 cells
9.0668 cells
10.0654 cells
11.0635 cells
12.0626 cells
13.0618 cells
14.0605 cells
15.0594 cells
16.0580 cells
17.0563 cells
18.0538 cells
19.0530 cells
20.0529 cells
21.0527 cells
22.0497 cells
23.0465 cells
24.0448 cells
25.0381 cells
26.0356 cells
27.0271 cells
28.0197 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

27. Small_Intestine

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.03,585 cells
1.03,270 cells
2.03,071 cells
3.03,007 cells
4.02,948 cells
5.02,561 cells
6.02,439 cells
7.02,347 cells
8.02,170 cells
9.02,088 cells
10.02,012 cells
11.01,984 cells
12.01,894 cells
13.01,762 cells
14.01,740 cells
15.01,032 cells
16.0968 cells
17.0826 cells
18.0725 cells
19.0598 cells
20.0479 cells
21.0306 cells
22.0224 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

28. Spleen

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.04,751 cells
1.04,517 cells
2.04,137 cells
3.04,097 cells
4.03,763 cells
5.03,345 cells
6.03,137 cells
7.03,069 cells
8.02,994 cells
9.02,839 cells
10.02,819 cells
11.02,706 cells
12.02,575 cells
13.02,334 cells
14.02,318 cells
15.02,241 cells
16.02,083 cells
17.02,022 cells
18.01,644 cells
19.01,629 cells
20.01,579 cells
21.01,483 cells
22.01,288 cells
23.01,212 cells
24.01,051 cells
25.0863 cells
26.0731 cells
27.0658 cells
28.0577 cells
29.0528 cells
30.0448 cells
31.0403 cells
32.0355 cells
33.0252 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

29. Stomach

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.02,446 cells
1.02,260 cells
2.02,109 cells
3.02,096 cells
4.01,722 cells
5.01,700 cells
6.01,696 cells
7.01,610 cells
8.01,562 cells
9.01,532 cells
10.01,338 cells
11.01,319 cells
12.01,254 cells
13.01,227 cells
14.01,175 cells
15.01,027 cells
16.0974 cells
17.0967 cells
18.0961 cells
19.0929 cells
20.0907 cells
21.0654 cells
22.0578 cells
23.0404 cells
24.0225 cells
25.0163 cells
26.0144 cells
27.085 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

30. Testis

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.0385 cells
1.0348 cells
2.0302 cells
3.0296 cells
4.0293 cells
5.0255 cells
6.0252 cells
7.0241 cells
8.0234 cells
9.0228 cells
11.0223 cells
10.0223 cells
12.0211 cells
13.0194 cells
14.0187 cells
15.0182 cells
16.0181 cells
17.0171 cells
19.0170 cells
18.0170 cells
20.0167 cells
21.0158 cells
22.0151 cells
23.0149 cells
24.0142 cells
25.0134 cells
27.0132 cells
26.0132 cells
28.0131 cells
29.0130 cells
30.0130 cells
31.0127 cells
32.0122 cells
33.0110 cells
34.0110 cells
35.0106 cells
36.0104 cells
37.097 cells
38.094 cells
39.078 cells
40.069 cells
41.067 cells
42.058 cells
43.057 cells
44.012 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

31. Thymus

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.02,136 cells
1.02,088 cells
2.02,033 cells
3.01,850 cells
4.01,742 cells
5.01,559 cells
6.01,554 cells
7.01,548 cells
8.01,467 cells
9.01,465 cells
10.01,427 cells
11.01,420 cells
12.01,344 cells
13.01,282 cells
14.01,224 cells
15.01,207 cells
16.01,126 cells
17.01,102 cells
19.01,091 cells
18.01,091 cells
20.01,067 cells
21.01,061 cells
22.01,041 cells
23.01,036 cells
24.01,003 cells
25.0935 cells
26.0927 cells
27.0920 cells
28.0836 cells
29.0663 cells
30.0559 cells
31.0493 cells
32.0478 cells
33.0423 cells
34.0329 cells
35.0317 cells
36.0212 cells
37.0184 cells
38.0137 cells
39.0134 cells
40.0121 cells
41.097 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

32. Tongue

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.02,591 cells
1.02,403 cells
2.02,299 cells
3.02,249 cells
4.02,213 cells
5.02,087 cells
6.02,004 cells
7.01,977 cells
8.01,678 cells
9.01,653 cells
10.01,623 cells
11.01,544 cells
12.01,369 cells
13.01,344 cells
14.01,229 cells
15.01,098 cells
16.01,097 cells
17.0964 cells
18.0957 cells
19.0936 cells
20.0913 cells
21.0907 cells
22.0906 cells
23.0759 cells
24.0429 cells
25.0428 cells
26.0427 cells
27.0380 cells
28.0149 cells
29.0118 cells
30.023 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

33. Trachea

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.01,411 cells
1.01,296 cells
2.01,283 cells
3.01,257 cells
4.01,214 cells
5.01,203 cells
6.01,100 cells
7.01,070 cells
8.01,017 cells
9.0989 cells
10.0943 cells
11.0940 cells
12.0923 cells
13.0900 cells
14.0885 cells
15.0872 cells
16.0729 cells
17.0584 cells
18.0574 cells
19.0547 cells
20.0530 cells
21.0519 cells
22.0471 cells
23.0367 cells
24.0323 cells
25.0284 cells
26.0225 cells
27.0215 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

34. Uterus

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.01,360 cells
1.01,341 cells
2.01,156 cells
3.01,106 cells
4.01,064 cells
5.01,057 cells
6.0975 cells
7.0936 cells
8.0929 cells
9.0900 cells
10.0880 cells
11.0856 cells
12.0801 cells
13.0779 cells
14.0777 cells
15.0711 cells
16.0705 cells
17.0639 cells
18.0634 cells
19.0600 cells
20.0542 cells
21.0467 cells
22.0438 cells
23.0433 cells
24.0432 cells
25.0421 cells
26.0334 cells
27.0296 cells
28.0153 cells
29.0114 cells
30.0110 cells
31.059 cells
32.024 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

35. Vasculature

Explore
SCVI leiden clustering (tissue)
10X run
Age
Age group
Ambient removal
Assay
Cell type
Cell type (broad cell class)
Cell type (compartment)
Cell type (free annotation)
Disease
Ethnicity
Is manually annotated
Is published in 2022
Notes
Reference genome
Replicate
SCVI batch
SCVI leiden clustering
Sample ID
Sample number
Sample preservation method
Sex
Subject ID
Tissue
Tissue (Anatomical position)
0.02,691 cells
1.02,267 cells
2.02,100 cells
3.02,096 cells
4.02,094 cells
5.01,971 cells
6.01,857 cells
7.01,741 cells
8.01,736 cells
9.01,735 cells
10.01,723 cells
11.01,666 cells
12.01,608 cells
13.01,478 cells
14.01,443 cells
15.01,249 cells
16.01,200 cells
17.01,166 cells
18.01,156 cells
19.01,127 cells
20.0991 cells
21.0956 cells
22.0950 cells
23.0944 cells
24.0888 cells
25.0709 cells
26.0567 cells
27.0555 cells
28.0523 cells
29.0459 cells
30.0452 cells
31.0302 cells
32.0166 cells
33.084 cells
Tabula Sapiens 2.0: A comprehensive transcriptomic atlas of human cell types

Alias names

GSE306755, Tabula Sapiens 2.0